JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITPK1_chr14_92931914_93120925	0/0	t0071	4941	1	1	0	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0072	4944	1	1	0	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0073	4944	1	1	0	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0074	4944	1	1	0	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0075	4944	1	1	0	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0076	4944	1	0	1	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0077	4944	1	1	0	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0078	4944	1	0	0	0	0	1	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0079	4944	1	1	0	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0080	4944	1	0	1	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0081	4944	1	0	0	0	0	1	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0082	4944	1	0	1	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0083	4944	1	0	1	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0084	4944	1	0	0	1	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0085	4944	1	1	0	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0086	4944	1	0	1	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0087	4944	1	1	0	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0088	4944	1	1	0	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0089	4944	1	1	0	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0090	4944	1	0	1	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0091	4944	1	0	0	0	0	1	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0092	4944	1	1	0	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0093	4944	1	1	0	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0094	4944	1	1	0	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPKA_chr15_41488874_41508551	1/1	t0001	440	419	92	82	192	10	41	copy fasta	ITPKA	chr15	41488874	41508551
ITPKA_chr15_41488874_41508551	0/0	t0002	440	2	0	0	0	0	2	copy fasta	ITPKA	chr15	41488874	41508551
ITPKA_chr15_41488874_41508551	0/0	t0003	440	2	0	0	0	0	2	copy fasta	ITPKA	chr15	41488874	41508551
ITPKA_chr15_41488874_41508551	0/0	t0004	440	1	0	0	0	0	1	copy fasta	ITPKA	chr15	41488874	41508551
ITPKA_chr15_41488874_41508551	0/0	t0005	440	1	0	0	1	0	0	copy fasta	ITPKA	chr15	41488874	41508551
ITPKA_chr15_41488874_41508551	0/0	t0006	440	1	0	0	1	0	0	copy fasta	ITPKA	chr15	41488874	41508551
ITPKB_chr1_226626690_226744282	0/0	t0001	3429	71	21	7	34	3	6	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/1	t0002	3428	65	2	14	35	5	8	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0003	3429	40	8	8	17	1	6	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0004	3429	27	0	2	20	1	4	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	1/0	t0005	3429	12	4	3	2	2	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0006	3429	11	0	3	7	0	1	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0007	3428	11	10	1	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0008	3428	10	0	2	8	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0009	3430	7	0	0	6	0	1	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0010	3428	6	0	6	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0011	3428	5	5	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0012	3429	5	5	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0013	3428	5	1	3	0	0	1	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0014	3429	5	4	1	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0015	3430	4	0	1	3	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0016	3428	4	4	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0017	3428	4	4	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0018	3428	3	3	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0019	3428	3	3	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0020	3430	3	0	0	3	0	0	copy fasta	ITPKB	chr1	226626690	226744282