JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITPKB_chr1_226626690_226744282	0/0	t0021	3428	2	1	1	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0022	3429	2	2	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0023	3430	2	0	0	2	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0024	3430	2	0	0	2	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0025	3428	2	0	1	1	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0026	3429	2	2	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0027	3428	2	0	2	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0028	3429	2	0	0	2	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0029	3429	2	0	0	2	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0030	3429	1	0	0	1	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0031	3428	1	1	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0032	3428	1	1	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0033	3429	1	1	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0034	3428	1	0	0	0	0	1	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0035	3429	1	0	0	0	0	1	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0036	3428	1	1	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0037	3430	1	0	0	1	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0038	3429	1	1	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0039	3428	1	0	0	1	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0040	3429	1	1	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0041	3429	1	0	0	1	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0042	3429	1	1	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0043	3429	1	0	0	0	0	1	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0044	3428	1	0	0	1	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0045	3428	1	0	0	0	0	1	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0046	3428	1	0	1	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0047	3430	1	0	1	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0048	3429	1	0	0	1	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0049	3429	1	1	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0050	3429	1	1	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0051	3430	1	0	0	1	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0052	3430	1	0	0	0	0	1	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0053	3429	1	0	0	1	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0054	3429	1	0	0	1	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0055	3429	1	0	0	1	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0056	3430	1	0	0	1	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0057	3428	1	0	0	1	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0058	3429	1	0	1	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0059	3428	1	0	0	1	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	t0060	3430	1	0	0	1	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKC_chr19_40712112_40745860	1/1	t0001	1325	194	51	27	91	7	16	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	t0002	1325	157	22	32	73	10	20	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	t0003	1325	11	10	1	0	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	t0004	1325	5	5	0	0	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	t0005	1325	4	4	0	0	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	t0006	1325	3	1	2	0	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	t0007	1325	2	2	0	0	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	t0008	1325	2	0	1	0	1	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	t0009	1325	1	0	0	0	0	1	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	t0010	1325	1	0	0	1	0	0	copy fasta	ITPKC	chr19	40712112	40745860