JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITPKC_chr19_40712112_40745860	0/0	t0011	1325	1	0	1	0	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	t0012	1325	1	1	0	0	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	t0013	1325	1	0	0	0	0	1	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	t0014	1325	1	0	0	1	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	t0015	1325	1	0	0	1	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	t0016	1325	1	0	0	1	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	t0017	1325	1	0	0	1	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	t0018	1325	1	0	0	1	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPR1_chr3_4488348_4852506	0/1	t0001	1634	76	28	18	14	6	9	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	t0002	1635	33	5	4	19	0	5	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	1/0	t0003	1632	18	2	10	5	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	t0004	1631	7	6	0	1	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	t0005	1636	6	0	2	2	0	2	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	t0006	1633	6	3	3	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	t0007	1634	6	5	1	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	t0008	1631	4	0	0	1	0	3	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	t0009	1634	4	4	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	t0010	1634	2	2	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	t0011	1635	2	2	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	t0012	1639	2	0	0	2	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	t0013	1634	1	0	0	0	0	1	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	t0014	1632	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	t0015	1634	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	t0016	1635	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	t0017	1635	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	t0018	1633	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	t0019	1634	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	t0020	1633	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	t0021	1632	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	t0022	1634	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR2_chr12_26330352_26838194	0/1	t0001	4460	24	6	6	7	0	4	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0002	4462	13	2	3	0	3	5	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0003	4460	12	7	3	0	0	2	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0004	4462	6	5	1	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0005	4462	5	0	1	3	0	1	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0006	4462	5	0	2	0	2	1	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	1/0	t0007	4459	4	3	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0008	4464	4	0	2	0	0	2	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0009	4460	4	4	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0010	4460	4	0	2	1	1	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0011	4462	3	0	1	2	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0012	4462	2	2	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0013	4461	2	2	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0014	4461	2	0	2	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0015	4462	2	2	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0016	4461	2	2	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0017	4462	2	1	1	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0018	4462	2	2	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0019	4459	2	2	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0020	4464	2	0	1	1	0	0	copy fasta	ITPR2	chr12	26330352	26838194