JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITPR2_chr12_26330352_26838194	0/0	t0021	4462	2	0	1	0	0	1	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0022	4462	2	0	2	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0023	4462	2	0	1	1	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0024	4462	2	0	2	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0025	4460	1	0	0	1	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0026	4460	1	0	0	1	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0027	4460	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0028	4461	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0029	4462	1	0	1	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0030	4460	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0031	4460	1	0	1	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0032	4459	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0033	4460	1	0	0	1	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0034	4463	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0035	4462	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0036	4462	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0037	4461	1	0	1	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0038	4462	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0039	4462	1	0	0	0	1	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0040	4462	1	0	0	0	0	1	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0041	4461	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0042	4462	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0043	4461	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0044	4462	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0045	4462	1	0	0	1	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0046	4461	1	0	0	0	0	1	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0047	4460	1	0	0	1	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0048	4460	1	0	0	1	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0049	4464	1	0	0	1	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0050	4462	1	0	1	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0051	4462	1	0	1	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0052	4462	1	0	1	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0053	4462	1	0	1	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0054	4461	1	0	1	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0055	4460	1	0	0	0	1	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	t0056	4464	1	0	1	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR3_chr6_33616322_33701562	1/0	t0001	1064	260	63	55	104	9	28	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/1	t0002	1063	39	19	5	11	3	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	t0003	1064	18	3	2	13	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	t0004	1065	10	0	3	7	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	t0005	1064	5	0	1	2	0	2	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	t0006	1063	3	1	2	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	t0007	1064	2	2	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	t0008	1064	2	2	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	t0009	1064	1	0	0	1	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	t0010	1064	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	t0011	1063	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPRID1_chr7_31509090_31661504	0/1	t0001	3802	87	16	13	44	7	6	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	t0002	3803	76	16	19	30	2	9	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	t0003	3803	44	5	12	21	1	5	copy fasta	ITPRID1	chr7	31509090	31661504