JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITPRID1_chr7_31509090_31661504	0/0	t0004	3802	21	10	3	8	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	t0005	3802	14	5	5	0	2	2	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	t0006	3803	13	12	1	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	t0007	3804	10	0	1	8	0	1	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	t0008	3802	8	8	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	1/0	t0009	3804	6	3	1	0	0	1	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	t0010	3802	5	0	1	0	1	3	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	t0011	3803	4	0	2	0	0	2	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	t0012	3803	3	0	1	0	0	2	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	t0013	3804	2	0	1	1	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	t0014	3803	1	0	0	0	0	1	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	t0015	3802	1	0	1	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	t0016	3802	1	0	1	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	t0017	3802	1	1	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	t0018	3803	1	1	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	t0019	3803	1	0	0	1	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	t0020	3802	1	0	1	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	t0021	3802	1	0	0	0	1	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	t0022	3802	1	0	0	1	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	t0023	3804	1	1	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	t0024	3803	1	1	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	t0025	3803	1	1	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	t0026	3803	1	1	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	t0027	3803	1	0	0	1	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	t0028	3803	1	1	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	t0029	3802	1	1	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	t0030	3802	1	0	0	1	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	t0031	3802	1	1	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	t0032	3802	1	0	1	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID2_chr2_181886730_181935738	0/1	t0001	1530	240	52	42	112	4	29	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	t0002	1530	30	24	0	0	2	4	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	t0003	1531	7	6	1	0	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	t0004	1531	3	3	0	0	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	t0005	1530	2	2	0	0	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	t0006	1530	2	0	0	2	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	t0007	1530	2	0	0	2	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	t0008	1530	1	0	0	0	0	1	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	t0009	1530	1	0	0	1	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	t0010	1530	1	0	0	1	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	t0011	1530	1	0	1	0	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	1/0	t0012	1529	1	0	0	0	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	t0013	1531	1	1	0	0	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRIPL1_chr2_96320317_96333353	0/0	t0001	397	327	62	60	160	7	38	copy fasta	ITPRIPL1	chr2	96320317	96333353
ITPRIPL1_chr2_96320317_96333353	1/1	t0002	397	33	22	4	0	5	0	copy fasta	ITPRIPL1	chr2	96320317	96333353
ITPRIPL1_chr2_96320317_96333353	0/0	t0003	397	2	0	0	2	0	0	copy fasta	ITPRIPL1	chr2	96320317	96333353
ITPRIPL1_chr2_96320317_96333353	0/0	t0004	397	2	0	0	0	0	2	copy fasta	ITPRIPL1	chr2	96320317	96333353
ITPRIPL2_chr16_19108964_19126629	0/0	t0001	6060	82	8	16	46	3	9	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0002	6059	22	9	0	11	0	2	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0003	6061	21	0	5	11	3	2	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0004	6060	17	4	7	5	0	1	copy fasta	ITPRIPL2	chr16	19108964	19126629