Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANKS1A_chr6_34884255_35096406	0/0	t0005	2946	30	15	5	4	1	5	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0006	2946	15	0	1	12	1	1	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0007	2946	13	2	9	1	0	1	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0008	2946	5	4	0	1	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0009	2946	4	0	0	4	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0010	2946	3	1	0	0	0	2	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0011	2947	2	2	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0012	2947	2	2	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0013	2946	2	2	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0014	2946	2	2	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0015	2946	2	2	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0016	2946	1	0	0	1	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0017	2946	1	0	0	1	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0018	2946	1	1	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0019	2946	1	0	0	1	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0020	2946	1	0	0	1	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0021	2946	1	1	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0022	2947	1	0	0	1	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0023	2947	1	1	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0024	2946	1	0	0	0	0	1	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0025	2946	1	1	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0026	2946	1	0	0	0	0	1	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0027	2946	1	0	1	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0028	2946	1	0	0	1	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0029	2946	1	0	1	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0030	2946	1	0	0	1	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0031	2946	1	1	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0032	2946	1	1	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0033	2946	1	0	0	0	1	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0034	2946	1	1	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0035	2946	1	1	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0036	2946	1	1	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0037	2946	1	0	0	0	0	1	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1B_chr12_98738974_99989936	0/0	t0001	2462	7	5	2	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	t0002	2465	6	6	0	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	1/0	t0003	2465	5	3	0	0	0	1	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/1	t0004	2468	3	1	1	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	t0005	2468	2	1	0	0	0	1	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	t0006	2466	2	2	0	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	t0007	2466	2	1	1	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	t0008	2464	2	2	0	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	t0009	2462	2	0	1	0	0	1	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	t0010	2462	1	1	0	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	t0011	2465	1	1	0	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	t0012	2466	1	0	1	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	t0013	2481	1	0	0	0	0	1	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	t0014	2478	1	0	1	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	t0015	2471	1	1	0	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	t0016	2465	1	1	0	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	t0017	2467	1	1	0	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936