JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITPRIPL2_chr16_19108964_19126629	0/0	t0055	6060	1	0	1	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0056	6060	1	0	0	0	0	1	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0057	6058	1	1	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0058	6064	1	0	1	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0059	6060	1	0	1	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0060	6060	1	0	0	1	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0061	6078	1	0	0	1	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0062	6058	1	0	1	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0063	6063	1	1	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0064	6060	1	0	1	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0065	6060	1	0	1	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0066	6061	1	0	0	1	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0067	6061	1	0	0	1	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0068	6061	1	0	1	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0069	6060	1	1	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0070	6058	1	1	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/1	t0071	6060	1	0	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0072	6060	1	0	0	1	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0073	6060	1	0	0	0	0	1	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0074	6060	1	0	0	1	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0075	6062	1	1	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0076	6066	1	0	0	0	0	1	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0077	6060	1	0	0	1	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0078	6059	1	1	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0079	6057	1	1	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0080	6079	1	0	1	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0081	6075	1	1	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0082	6079	1	1	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0083	6077	1	1	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0084	6060	1	1	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0085	6073	1	1	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0086	6061	1	1	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0087	6057	1	1	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0088	6057	1	1	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0089	6058	1	0	0	1	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0090	6056	1	1	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0091	6057	1	1	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0092	6056	1	1	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0093	6058	1	0	0	0	0	1	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0094	6060	1	1	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0095	6060	1	1	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0096	6059	1	1	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0097	6065	1	1	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0098	6060	1	0	0	0	0	1	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0099	6062	1	1	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0100	6079	1	0	1	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	t0101	6057	1	1	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIP_chr10_104304700_104343465	0/0	t0001	4942	141	22	29	73	5	12	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0002	4942	54	16	7	18	4	9	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0003	4942	21	3	0	18	0	0	copy fasta	ITPRIP	chr10	104304700	104343465