JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITPRIP_chr10_104304700_104343465	0/0	t0004	4942	17	16	1	0	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0005	4942	13	0	6	0	4	3	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0006	4942	9	7	2	0	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0007	4942	8	1	3	0	0	4	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/1	t0008	4941	7	2	0	3	0	1	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0009	4942	6	6	0	0	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	1/0	t0010	4942	4	0	0	0	1	2	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0011	4942	4	4	0	0	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0012	4942	3	3	0	0	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0013	4942	3	3	0	0	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0014	4942	2	2	0	0	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0015	4942	2	0	0	2	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0016	4942	2	0	0	2	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0017	4942	2	0	0	0	0	2	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0018	4942	2	2	0	0	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0019	4942	2	0	0	2	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0020	4942	2	0	0	2	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0021	4942	2	2	0	0	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0022	4942	2	1	1	0	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0023	4942	1	0	0	1	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0024	4942	1	0	0	1	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0025	4942	1	1	0	0	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0026	4942	1	0	0	1	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0027	4942	1	1	0	0	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0028	4942	1	1	0	0	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0029	4942	1	0	0	1	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0030	4942	1	0	0	0	1	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0031	4942	1	0	0	1	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0032	4942	1	0	0	1	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0033	4942	1	0	0	1	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0034	4942	1	0	0	1	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0035	4942	1	1	0	0	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0036	4942	1	0	0	0	1	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0037	4942	1	0	1	0	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	t0038	4942	1	0	0	0	0	1	copy fasta	ITPRIP	chr10	104304700	104343465
ITSN1_chr21_33637501_33904861	0/0	t0001	11812	41	1	7	22	1	10	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0002	11814	32	0	9	20	1	2	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0003	11811	26	5	1	13	1	6	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	1/0	t0004	11807	25	3	4	14	1	2	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0005	11807	11	0	5	2	2	2	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0006	11812	6	5	0	1	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0007	11811	4	4	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0008	11807	4	4	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0009	11812	4	4	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0010	11812	4	4	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0011	11810	3	3	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0012	11808	3	3	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0013	11812	3	3	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0014	11807	2	0	1	0	0	1	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0015	11807	2	1	1	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861