JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITSN1_chr21_33637501_33904861	0/0	t0016	11805	2	2	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0017	11816	2	0	0	2	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0018	11814	2	0	0	2	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0019	11807	2	0	2	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0020	11810	2	2	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0021	11811	2	1	1	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0022	11811	2	1	1	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0023	11812	2	0	0	0	0	2	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0024	11811	2	0	0	2	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0025	11807	2	0	1	0	1	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0026	11812	2	2	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0027	11816	1	0	0	0	0	1	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0028	11808	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0029	11812	1	0	1	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0030	11814	1	0	0	0	0	1	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0031	11806	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0032	11810	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0033	11811	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0034	11811	1	0	0	1	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0035	11812	1	0	1	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0036	11807	1	0	1	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0037	11811	1	0	0	0	0	1	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0038	11807	1	0	1	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0039	11811	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0040	11797	1	0	1	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0041	11807	1	0	0	1	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0042	11807	1	0	1	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0043	11807	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0044	11807	1	0	0	1	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0045	11807	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0046	11807	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0047	11811	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0048	11814	1	0	0	0	0	1	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0049	11812	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0050	11812	1	0	0	1	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/1	t0051	11814	1	0	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0052	11812	1	0	0	1	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0053	11812	1	0	0	0	0	1	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0054	11814	1	0	0	0	1	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0055	11811	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0056	11808	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0057	11808	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0058	11808	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0059	11807	1	0	1	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0060	11812	1	0	0	1	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0061	11812	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0062	11807	1	0	0	1	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0063	11812	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0064	11807	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0065	11807	1	0	1	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861