JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITSN1_chr21_33637501_33904861	0/0	t0066	11809	1	0	1	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0067	11807	1	0	0	1	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0068	11806	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0069	11808	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0070	11812	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0071	11802	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0072	11802	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0073	11812	1	0	1	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0074	11807	1	0	1	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0075	11810	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	t0076	11808	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN2_chr2_24197864_24365536	0/1	t0001	1029	197	67	29	65	11	24	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	1/0	t0002	1029	14	1	2	6	1	3	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	t0003	1029	5	0	2	0	2	1	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	t0004	1029	3	0	3	0	0	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	t0005	1029	2	2	0	0	0	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	t0006	1029	1	1	0	0	0	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	t0007	1029	1	1	0	0	0	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	t0008	1029	1	0	0	1	0	0	copy fasta	ITSN2	chr2	24197864	24365536
IVD_chr15_40400795_40426308	0/1	t0001	3077	148	2	22	96	5	22	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	1/0	t0002	3079	100	25	14	39	6	15	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	t0003	3077	34	2	5	18	4	5	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	t0004	3041	22	9	11	0	1	1	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	t0005	3078	17	16	1	0	0	0	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	t0006	3077	13	1	9	3	0	0	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	t0007	3077	6	5	1	0	0	0	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	t0008	3079	5	5	0	0	0	0	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	t0009	3079	4	3	1	0	0	0	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	t0010	3079	4	3	1	0	0	0	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	t0011	3079	3	3	0	0	0	0	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	t0012	3077	2	1	1	0	0	0	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	t0013	3077	2	0	0	0	0	2	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	t0014	3078	2	2	0	0	0	0	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	t0015	3077	1	0	0	1	0	0	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	t0016	3067	1	0	0	0	0	1	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	t0017	3077	1	0	0	1	0	0	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	t0018	3078	1	0	0	1	0	0	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	t0019	3077	1	0	0	1	0	0	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	t0020	3077	1	0	0	1	0	0	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	t0021	3077	1	0	0	1	0	0	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	t0022	3078	1	1	0	0	0	0	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	t0023	3079	1	1	0	0	0	0	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	t0024	3079	1	1	0	0	0	0	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	t0025	3079	1	0	0	1	0	0	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	t0026	3079	1	1	0	0	0	0	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	t0027	3078	1	0	0	1	0	0	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	t0028	3077	1	1	0	0	0	0	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	t0029	3079	1	1	0	0	0	0	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	t0030	3079	1	1	0	0	0	0	copy fasta	IVD	chr15	40400795	40426308
IVL_chr1_152903546_152916886	1/1	t0001	395	213	30	58	88	12	23	copy fasta	IVL	chr1	152903546	152916886