JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IVL_chr1_152903546_152916886	0/0	t0002	395	194	60	18	101	2	13	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	t0003	395	8	0	0	8	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	t0004	395	4	4	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	t0005	395	2	0	2	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	t0006	395	1	0	0	1	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	t0007	395	1	1	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	t0008	395	1	0	0	1	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	t0009	395	1	0	0	1	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	t0010	395	1	1	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVNS1ABP_chr1_185291388_185322243	1/1	t0001	2185	194	35	40	94	6	17	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	t0002	2185	148	50	23	58	6	11	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	t0003	2185	20	0	0	18	0	2	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	t0004	2185	6	6	0	0	0	0	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	t0005	2185	2	0	2	0	0	0	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	t0006	2185	2	2	0	0	0	0	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	t0007	2185	2	0	0	0	0	2	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	t0008	2185	1	1	0	0	0	0	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	t0009	2185	1	1	0	0	0	0	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	t0010	2185	1	0	0	1	0	0	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	t0011	2185	1	0	1	0	0	0	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	t0012	2185	1	1	0	0	0	0	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	t0013	2185	1	0	0	1	0	0	copy fasta	IVNS1ABP	chr1	185291388	185322243
IWS1_chr2_127475812_127531489	1/1	t0001	514	324	79	56	140	12	35	copy fasta	IWS1	chr2	127475812	127531489
IWS1_chr2_127475812_127531489	0/0	t0002	514	6	6	0	0	0	0	copy fasta	IWS1	chr2	127475812	127531489
IWS1_chr2_127475812_127531489	0/0	t0003	514	3	3	0	0	0	0	copy fasta	IWS1	chr2	127475812	127531489
IWS1_chr2_127475812_127531489	0/0	t0004	514	3	3	0	0	0	0	copy fasta	IWS1	chr2	127475812	127531489
IWS1_chr2_127475812_127531489	0/0	t0005	514	1	0	0	0	0	1	copy fasta	IWS1	chr2	127475812	127531489
IWS1_chr2_127475812_127531489	0/0	t0006	514	1	1	0	0	0	0	copy fasta	IWS1	chr2	127475812	127531489
IYD_chr6_150364012_150410969	0/0	t0001	7767	60	12	14	22	6	6	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0002	7765	47	0	7	34	1	5	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0003	7753	39	0	4	25	1	9	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0004	7768	28	6	3	18	0	1	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0005	7768	15	1	3	7	1	3	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0006	7768	15	2	4	6	0	3	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0007	7753	11	0	0	11	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0008	7765	10	7	3	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0009	7765	9	2	7	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0010	7767	8	0	0	8	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0011	7767	7	0	3	4	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0012	7767	6	0	2	0	2	2	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0013	7753	5	0	0	5	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0014	7768	5	5	0	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0015	7767	5	0	3	2	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0016	7765	5	0	0	5	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0017	7767	4	0	0	2	0	2	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0018	7768	4	4	0	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0019	7767	4	0	0	4	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0020	7763	4	4	0	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0021	7765	4	4	0	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	1/0	t0022	7753	3	0	2	0	0	0	copy fasta	IYD	chr6	150364012	150410969