JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IYD_chr6_150364012_150410969	0/0	t0073	7767	1	0	0	0	1	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0074	7767	1	1	0	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0075	7768	1	0	0	1	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0076	7767	1	0	0	1	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0077	7768	1	0	0	0	0	1	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0078	7768	1	0	0	1	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0079	7767	1	0	1	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0080	7767	1	1	0	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0081	7754	1	0	0	0	0	1	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0082	7767	1	0	0	0	0	1	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0083	7767	1	0	1	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0084	7767	1	0	0	0	1	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0085	7767	1	0	0	0	0	1	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0086	7767	1	0	1	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0087	7768	1	0	1	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0088	7768	1	0	1	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0089	7768	1	1	0	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0090	7768	1	0	0	1	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0091	7765	1	1	0	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0092	7765	1	1	0	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0093	7765	1	1	0	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0094	7765	1	1	0	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0095	7765	1	1	0	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0096	7765	1	1	0	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0097	7765	1	1	0	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0098	7767	1	1	0	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0099	7765	1	1	0	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0100	7765	1	0	0	1	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0101	7765	1	1	0	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0102	7765	1	0	0	1	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0103	7765	1	0	0	1	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0104	7765	1	1	0	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0105	7765	1	0	0	1	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0106	7765	1	1	0	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0107	7750	1	0	0	1	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0108	7765	1	1	0	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0109	7765	1	0	1	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	t0110	7765	1	0	0	1	0	0	copy fasta	IYD	chr6	150364012	150410969
IZUMO1R_chr11_94299580_94313146	0/1	t0001	763	224	55	34	94	5	35	copy fasta	IZUMO1R	chr11	94299580	94313146
IZUMO1R_chr11_94299580_94313146	0/0	t0002	763	185	11	39	111	13	11	copy fasta	IZUMO1R	chr11	94299580	94313146
IZUMO1R_chr11_94299580_94313146	0/0	t0003	763	36	29	1	4	0	2	copy fasta	IZUMO1R	chr11	94299580	94313146
IZUMO1R_chr11_94299580_94313146	0/0	t0004	763	4	1	3	0	0	0	copy fasta	IZUMO1R	chr11	94299580	94313146
IZUMO1R_chr11_94299580_94313146	0/0	t0005	763	3	0	0	3	0	0	copy fasta	IZUMO1R	chr11	94299580	94313146
IZUMO1R_chr11_94299580_94313146	0/0	t0006	763	2	0	0	2	0	0	copy fasta	IZUMO1R	chr11	94299580	94313146
IZUMO1R_chr11_94299580_94313146	0/0	t0007	763	1	1	0	0	0	0	copy fasta	IZUMO1R	chr11	94299580	94313146
IZUMO1R_chr11_94299580_94313146	1/0	t0008	761	1	0	0	0	0	0	copy fasta	IZUMO1R	chr11	94299580	94313146
IZUMO1R_chr11_94299580_94313146	0/0	t0009	763	1	0	1	0	0	0	copy fasta	IZUMO1R	chr11	94299580	94313146
IZUMO1R_chr11_94299580_94313146	0/0	t0010	763	1	1	0	0	0	0	copy fasta	IZUMO1R	chr11	94299580	94313146
IZUMO1_chr19_48735852_48751909	0/1	t0001	605	241	28	39	143	9	21	copy fasta	IZUMO1	chr19	48735852	48751909
IZUMO1_chr19_48735852_48751909	1/0	t0002	605	162	63	37	36	5	20	copy fasta	IZUMO1	chr19	48735852	48751909