JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IZUMO1_chr19_48735852_48751909	0/0	t0003	605	3	3	0	0	0	0	copy fasta	IZUMO1	chr19	48735852	48751909
IZUMO1_chr19_48735852_48751909	0/0	t0004	605	2	2	0	0	0	0	copy fasta	IZUMO1	chr19	48735852	48751909
IZUMO1_chr19_48735852_48751909	0/0	t0005	605	1	0	0	0	0	1	copy fasta	IZUMO1	chr19	48735852	48751909
IZUMO1_chr19_48735852_48751909	0/0	t0006	605	1	0	0	1	0	0	copy fasta	IZUMO1	chr19	48735852	48751909
IZUMO2_chr19_50147548_50168281	1/1	t0001	149	393	94	80	159	12	46	copy fasta	IZUMO2	chr19	50147548	50168281
IZUMO2_chr19_50147548_50168281	0/0	t0002	149	1	0	0	1	0	0	copy fasta	IZUMO2	chr19	50147548	50168281
IZUMO3_chr9_24537952_24550897	1/0	t0001	526	315	57	58	151	12	36	copy fasta	IZUMO3	chr9	24537952	24550897
IZUMO3_chr9_24537952_24550897	0/1	t0002	526	80	12	16	41	2	8	copy fasta	IZUMO3	chr9	24537952	24550897
IZUMO3_chr9_24537952_24550897	0/0	t0003	526	12	9	3	0	0	0	copy fasta	IZUMO3	chr9	24537952	24550897
IZUMO3_chr9_24537952_24550897	0/0	t0004	526	6	6	0	0	0	0	copy fasta	IZUMO3	chr9	24537952	24550897
IZUMO3_chr9_24537952_24550897	0/0	t0005	526	4	3	1	0	0	0	copy fasta	IZUMO3	chr9	24537952	24550897
IZUMO3_chr9_24537952_24550897	0/0	t0006	526	3	0	0	3	0	0	copy fasta	IZUMO3	chr9	24537952	24550897
IZUMO3_chr9_24537952_24550897	0/0	t0007	526	1	1	0	0	0	0	copy fasta	IZUMO3	chr9	24537952	24550897
IZUMO3_chr9_24537952_24550897	0/0	t0008	541	1	0	0	1	0	0	copy fasta	IZUMO3	chr9	24537952	24550897
IZUMO3_chr9_24537952_24550897	0/0	t0009	526	1	1	0	0	0	0	copy fasta	IZUMO3	chr9	24537952	24550897
IZUMO3_chr9_24537952_24550897	0/0	t0010	526	1	0	0	1	0	0	copy fasta	IZUMO3	chr9	24537952	24550897
IZUMO3_chr9_24537952_24550897	0/0	t0011	526	1	0	0	1	0	0	copy fasta	IZUMO3	chr9	24537952	24550897
IZUMO3_chr9_24537952_24550897	0/0	t0012	526	1	1	0	0	0	0	copy fasta	IZUMO3	chr9	24537952	24550897
IZUMO4_chr19_2091915_2104590	1/0	t0001	277	375	87	61	179	10	37	copy fasta	IZUMO4	chr19	2091915	2104590
IZUMO4_chr19_2091915_2104590	0/1	t0002	277	64	2	23	25	6	7	copy fasta	IZUMO4	chr19	2091915	2104590
IZUMO4_chr19_2091915_2104590	0/0	t0003	277	7	7	0	0	0	0	copy fasta	IZUMO4	chr19	2091915	2104590
IZUMO4_chr19_2091915_2104590	0/0	t0004	277	4	0	2	0	0	2	copy fasta	IZUMO4	chr19	2091915	2104590
IZUMO4_chr19_2091915_2104590	0/0	t0005	277	2	2	0	0	0	0	copy fasta	IZUMO4	chr19	2091915	2104590
IZUMO4_chr19_2091915_2104590	0/0	t0006	277	1	0	0	1	0	0	copy fasta	IZUMO4	chr19	2091915	2104590
IZUMO4_chr19_2091915_2104590	0/0	t0007	277	1	0	0	1	0	0	copy fasta	IZUMO4	chr19	2091915	2104590
JADE1_chr4_128804700_128880224	1/1	t0001	3167	96	9	31	39	4	11	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0002	3161	56	14	14	25	1	2	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0003	3165	35	5	8	10	4	8	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0004	3162	14	14	0	0	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0005	3168	9	9	0	0	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0006	3165	8	3	0	2	0	3	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0007	3168	5	0	0	5	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0008	3168	5	1	2	2	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0009	3163	4	4	0	0	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0010	3164	4	1	2	0	1	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0011	3169	3	3	0	0	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0012	3157	3	3	0	0	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0013	3167	2	0	0	0	0	2	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0014	3162	2	2	0	0	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0015	3162	2	2	0	0	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0016	3168	2	0	1	1	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0017	3163	2	2	0	0	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0018	3162	2	0	0	2	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0019	3168	2	1	0	1	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0020	3168	2	2	0	0	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0021	3164	2	2	0	0	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0022	3167	1	0	0	1	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0023	3162	1	0	0	1	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0024	3169	1	0	1	0	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0025	3168	1	1	0	0	0	0	copy fasta	JADE1	chr4	128804700	128880224