JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
JADE1_chr4_128804700_128880224	0/0	t0026	3168	1	0	0	1	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0027	3164	1	1	0	0	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0028	3163	1	0	0	1	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0029	3169	1	1	0	0	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0030	3162	1	0	0	1	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0031	3168	1	0	0	1	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0032	3162	1	1	0	0	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0033	3166	1	0	1	0	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0034	3167	1	0	0	1	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0035	3157	1	1	0	0	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0036	3168	1	1	0	0	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0037	3165	1	0	0	1	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0038	3165	1	1	0	0	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	t0039	3162	1	0	0	1	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE2_chr5_134520670_134588227	0/0	t0001	4256	72	20	14	28	1	9	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0002	4256	39	7	6	15	4	7	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0003	4256	26	0	0	24	0	2	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0004	4257	21	6	1	10	0	4	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0005	4256	21	0	10	6	2	3	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0006	4255	19	16	2	0	1	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0007	4257	18	0	6	10	0	2	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0008	4257	15	3	6	5	0	1	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0009	4256	15	0	5	9	0	1	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0010	4255	14	6	0	8	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/1	t0011	4256	10	0	3	1	1	4	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0012	4256	9	0	1	7	0	1	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0013	4257	8	0	0	7	1	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0014	4255	5	0	0	5	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0015	4255	4	2	2	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0016	4256	4	0	0	0	0	4	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0017	4256	4	0	1	3	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0018	4257	4	0	0	3	0	1	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0019	4255	3	2	1	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0020	4257	3	0	1	2	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0021	4256	3	0	0	3	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0022	4257	3	0	2	1	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0023	4256	3	0	2	0	0	1	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0024	4256	3	0	0	3	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0025	4255	3	0	0	3	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0026	4257	2	0	0	1	0	1	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0027	4255	2	2	0	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0028	4255	2	0	1	1	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0029	4257	2	2	0	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0030	4255	2	2	0	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0031	4257	2	2	0	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0032	4256	2	0	0	2	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0033	4255	2	1	1	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0034	4256	2	0	2	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0035	4257	2	0	1	0	0	1	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0036	4255	1	1	0	0	0	0	copy fasta	JADE2	chr5	134520670	134588227