JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
JADE2_chr5_134520670_134588227	0/0	t0037	4257	1	0	0	1	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0038	4257	1	1	0	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0039	4257	1	1	0	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0040	4256	1	0	0	0	0	1	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0041	4256	1	1	0	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0042	4256	1	0	0	1	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0043	4256	1	1	0	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	1/0	t0044	4253	1	0	0	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0045	4255	1	1	0	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0046	4255	1	1	0	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0047	4256	1	0	0	0	1	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0048	4256	1	1	0	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0049	4257	1	1	0	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0050	4255	1	1	0	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0051	4254	1	0	0	1	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0052	4256	1	0	0	1	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0053	4257	1	0	0	1	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0054	4257	1	0	0	1	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0055	4256	1	0	0	0	1	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0056	4256	1	1	0	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0057	4256	1	1	0	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0058	4256	1	0	0	1	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0059	4256	1	0	0	1	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0060	4255	1	1	0	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0061	4255	1	1	0	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0062	4255	1	1	0	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0063	4255	1	0	1	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0064	4254	1	0	0	0	0	1	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0065	4256	1	0	0	1	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0066	4255	1	0	0	1	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0067	4257	1	0	0	1	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0068	4256	1	0	0	1	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0069	4256	1	0	0	1	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0070	4255	1	0	1	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0071	4255	1	0	1	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0072	4257	1	0	1	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0073	4257	1	0	0	1	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	t0074	4257	1	0	0	1	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE3_chrX_46907421_47066242	0/1	t0001	2476	67	22	12	22	2	8	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0002	2477	55	5	14	31	2	3	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	1/0	t0003	2476	50	1	9	30	6	3	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0004	2475	21	19	0	1	0	1	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0005	2478	15	2	2	10	0	1	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0006	2475	7	2	0	5	0	0	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0007	2477	5	0	0	5	0	0	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0008	2477	4	0	1	2	0	1	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0009	2475	4	2	2	0	0	0	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0010	2479	2	0	0	1	1	0	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0011	2478	2	0	0	2	0	0	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0012	2476	2	0	0	2	0	0	copy fasta	JADE3	chrX	46907421	47066242