Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANKS1B_chr12_98738974_99989936	0/0	t0018	2465	1	1	0	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	t0019	2464	1	1	0	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	t0020	2465	1	1	0	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	t0021	2466	1	1	0	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	t0022	2463	1	1	0	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	t0023	2481	1	0	1	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	t0024	2468	1	1	0	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	t0025	2466	1	1	0	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	t0026	2464	1	1	0	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS3_chr16_4691511_4739271	0/0	t0001	801	158	0	45	88	11	14	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	1/0	t0002	802	93	26	12	45	1	8	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	t0003	801	69	28	11	15	3	12	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	t0004	801	12	12	0	0	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/1	t0005	802	8	0	1	3	1	2	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	t0006	801	7	6	1	0	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	t0007	801	6	6	0	0	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	t0008	801	5	2	0	3	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	t0009	801	3	3	0	0	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	t0010	802	2	0	0	1	0	1	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	t0011	802	2	0	0	2	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	t0012	801	1	0	0	1	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	t0013	802	1	0	0	0	0	1	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	t0014	801	1	0	0	1	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	t0015	801	1	1	0	0	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	t0016	801	1	1	0	0	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	t0017	801	1	0	0	1	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	t0018	801	1	1	0	0	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	t0019	801	1	1	0	0	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	t0020	801	1	1	0	0	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS4B_chr16_21228699_21258850	0/0	t0001	3069	133	25	11	82	0	15	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	1/1	t0002	3070	60	0	32	10	7	9	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0003	3068	51	5	5	29	3	9	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0004	3069	43	28	8	0	2	5	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0005	3068	28	0	6	22	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0006	3069	19	4	0	14	0	1	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0007	3071	14	0	3	7	1	3	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0008	3069	10	0	0	9	0	1	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0009	3069	6	0	0	6	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0010	3070	6	1	1	3	0	1	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0011	3069	5	4	1	0	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0012	3065	4	4	0	0	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0013	3070	4	1	0	3	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0014	3069	4	0	3	0	0	1	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0015	3069	2	0	0	2	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0016	3070	2	0	1	0	0	1	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0017	3069	2	0	2	0	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0018	3070	2	1	0	0	1	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0019	3069	2	2	0	0	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0020	3070	2	0	1	0	0	1	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0021	3069	1	0	0	1	0	0	copy fasta	ANKS4B	chr16	21228699	21258850