JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
JADE3_chrX_46907421_47066242	0/0	t0013	2474	2	2	0	0	0	0	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0014	2476	2	2	0	0	0	0	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0015	2478	2	2	0	0	0	0	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0016	2475	1	0	0	1	0	0	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0017	2476	1	1	0	0	0	0	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0018	2477	1	0	0	0	0	1	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0019	2478	1	0	1	0	0	0	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0020	2477	1	0	0	0	0	1	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0021	2476	1	0	0	1	0	0	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0022	2476	1	0	0	0	0	1	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0023	2477	1	0	0	1	0	0	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0024	2477	1	0	0	1	0	0	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0025	2479	1	1	0	0	0	0	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0026	2476	1	1	0	0	0	0	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0027	2479	1	0	0	0	0	1	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0028	2478	1	0	0	0	0	1	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0029	2477	1	0	0	0	0	1	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0030	2477	1	0	1	0	0	0	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0031	2476	1	0	1	0	0	0	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0032	2478	1	0	0	1	0	0	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	t0033	2476	1	0	0	0	0	1	copy fasta	JADE3	chrX	46907421	47066242
JAG1_chr20_10632684_10678999	1/1	t0001	2284	98	9	9	63	3	12	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0002	2284	80	30	13	27	5	5	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0003	2284	53	4	7	35	0	7	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0004	2283	34	1	11	17	3	2	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0005	2283	31	4	8	12	3	4	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0006	2284	24	11	9	2	0	2	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0007	2284	19	4	8	4	0	3	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0008	2284	18	13	4	1	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0009	2283	7	0	0	5	0	2	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0010	2284	6	2	1	1	0	2	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0011	2283	4	4	0	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0012	2284	4	2	2	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0013	2284	3	3	0	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0014	2284	3	3	0	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0015	2285	3	3	0	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0016	2283	3	0	2	0	0	1	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0017	2283	2	0	0	0	0	2	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0018	2283	2	1	1	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0019	2285	2	0	0	2	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0020	2284	2	0	1	0	1	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0021	2283	2	1	0	0	1	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0022	2284	1	0	0	1	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0023	2285	1	0	1	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0024	2284	1	0	0	1	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0025	2283	1	0	1	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0026	2283	1	0	1	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0027	2284	1	1	0	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0028	2285	1	1	0	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0029	2283	1	0	0	1	0	0	copy fasta	JAG1	chr20	10632684	10678999