JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
JAG1_chr20_10632684_10678999	0/0	t0030	2283	1	0	1	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0031	2284	1	0	0	1	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0032	2284	1	1	0	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	t0033	2284	1	0	0	1	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG2_chr14_105135995_105173776	0/0	t0001	2057	173	47	41	61	11	13	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	t0002	2057	80	11	3	56	0	10	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/1	t0003	2058	46	1	12	25	0	7	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	t0004	2057	21	20	1	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	1/0	t0005	2057	13	1	4	0	3	4	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	t0006	2057	5	4	1	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	t0007	2057	5	1	4	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	t0008	2058	2	0	1	1	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	t0009	2057	2	2	0	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	t0010	2057	2	2	0	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	t0011	2057	2	1	0	1	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	t0012	2057	1	0	1	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	t0013	2057	1	0	0	0	0	1	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	t0014	2057	1	0	0	1	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	t0015	2058	1	0	0	1	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	t0016	2057	1	0	0	1	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	t0017	2057	1	0	1	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	t0018	2057	1	1	0	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	t0019	2057	1	0	0	0	0	1	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	t0020	2057	1	0	0	1	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	t0021	2057	1	1	0	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	t0022	2057	1	0	0	1	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	t0023	2032	1	0	1	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	t0024	2058	1	0	0	1	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAGN1_chr3_9885610_9899349	0/1	t0001	1085	115	41	36	14	9	14	copy fasta	JAGN1	chr3	9885610	9899349
JAGN1_chr3_9885610_9899349	1/0	t0002	1086	111	26	26	43	2	13	copy fasta	JAGN1	chr3	9885610	9899349
JAGN1_chr3_9885610_9899349	0/0	t0003	1086	104	2	12	79	1	10	copy fasta	JAGN1	chr3	9885610	9899349
JAGN1_chr3_9885610_9899349	0/0	t0004	1086	20	8	1	11	0	0	copy fasta	JAGN1	chr3	9885610	9899349
JAGN1_chr3_9885610_9899349	0/0	t0005	1086	17	2	1	13	1	0	copy fasta	JAGN1	chr3	9885610	9899349
JAGN1_chr3_9885610_9899349	0/0	t0006	1085	6	0	1	1	2	2	copy fasta	JAGN1	chr3	9885610	9899349
JAGN1_chr3_9885610_9899349	0/0	t0007	1085	5	5	0	0	0	0	copy fasta	JAGN1	chr3	9885610	9899349
JAGN1_chr3_9885610_9899349	0/0	t0008	1086	4	4	0	0	0	0	copy fasta	JAGN1	chr3	9885610	9899349
JAGN1_chr3_9885610_9899349	0/0	t0009	1086	3	0	1	0	0	2	copy fasta	JAGN1	chr3	9885610	9899349
JAGN1_chr3_9885610_9899349	0/0	t0010	1086	3	3	0	0	0	0	copy fasta	JAGN1	chr3	9885610	9899349
JAGN1_chr3_9885610_9899349	0/0	t0011	1086	2	2	0	0	0	0	copy fasta	JAGN1	chr3	9885610	9899349
JAGN1_chr3_9885610_9899349	0/0	t0012	1085	2	0	0	1	0	1	copy fasta	JAGN1	chr3	9885610	9899349
JAGN1_chr3_9885610_9899349	0/0	t0013	1086	1	0	0	0	1	0	copy fasta	JAGN1	chr3	9885610	9899349
JAGN1_chr3_9885610_9899349	0/0	t0014	1086	1	1	0	0	0	0	copy fasta	JAGN1	chr3	9885610	9899349
JAGN1_chr3_9885610_9899349	0/0	t0015	1085	1	0	0	0	0	1	copy fasta	JAGN1	chr3	9885610	9899349
JAGN1_chr3_9885610_9899349	0/0	t0016	1086	1	1	0	0	0	0	copy fasta	JAGN1	chr3	9885610	9899349
JAGN1_chr3_9885610_9899349	0/0	t0017	1086	1	0	0	0	0	1	copy fasta	JAGN1	chr3	9885610	9899349
JAGN1_chr3_9885610_9899349	0/0	t0018	1086	1	1	0	0	0	0	copy fasta	JAGN1	chr3	9885610	9899349
JAGN1_chr3_9885610_9899349	0/0	t0019	1117	1	0	0	1	0	0	copy fasta	JAGN1	chr3	9885610	9899349
JAGN1_chr3_9885610_9899349	0/0	t0020	1086	1	0	0	1	0	0	copy fasta	JAGN1	chr3	9885610	9899349
JAK1_chr1_64828229_64971549	0/0	t0001	1632	182	58	31	70	4	19	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	1/0	t0002	1628	116	15	23	53	6	18	copy fasta	JAK1	chr1	64828229	64971549