JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
JAK1_chr1_64828229_64971549	0/1	t0003	1632	9	2	2	0	2	2	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	0/0	t0004	1632	5	5	0	0	0	0	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	0/0	t0005	1636	3	2	1	0	0	0	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	0/0	t0006	1632	2	0	0	2	0	0	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	0/0	t0007	1632	2	2	0	0	0	0	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	0/0	t0008	1632	1	0	0	1	0	0	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	0/0	t0009	1632	1	0	1	0	0	0	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	0/0	t0010	1628	1	0	0	0	0	1	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	0/0	t0011	1632	1	0	0	1	0	0	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	0/0	t0012	1628	1	0	0	1	0	0	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	0/0	t0013	1628	1	1	0	0	0	0	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	0/0	t0014	1632	1	1	0	0	0	0	copy fasta	JAK1	chr1	64828229	64971549
JAK2_chr9_4980272_5134948	0/1	t0001	3619	69	1	16	42	0	9	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0002	3623	57	2	13	34	3	5	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0003	3619	56	6	19	21	2	8	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0004	3623	29	3	6	17	2	1	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	1/0	t0005	3625	15	3	5	3	1	2	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0006	3623	15	14	0	0	0	1	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0007	3621	14	0	0	13	0	1	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0008	3621	8	4	0	4	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0009	3625	6	1	0	4	0	1	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0010	3619	6	0	5	0	0	1	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0011	3621	6	2	1	3	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0012	3619	5	5	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0013	3621	5	5	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0014	3621	4	3	1	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0015	3623	3	1	2	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0016	3631	3	3	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0017	3627	3	0	0	1	0	2	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0018	3623	3	3	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0019	3619	3	0	0	3	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0020	3619	2	0	1	0	0	1	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0021	3623	2	2	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0022	3629	2	2	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0023	3627	2	2	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0024	3627	2	2	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0025	3625	2	1	1	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0026	3625	2	2	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0027	3621	2	0	0	2	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0028	3619	2	0	2	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0029	3621	2	2	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0030	3621	2	2	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0031	3619	2	0	2	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0032	3625	2	0	1	0	0	1	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0033	3619	1	0	0	1	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0034	3619	1	0	0	1	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0035	3621	1	1	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0036	3623	1	0	0	1	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0037	3623	1	0	0	1	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0038	3623	1	0	0	0	0	1	copy fasta	JAK2	chr9	4980272	5134948