JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
JAK2_chr9_4980272_5134948	0/0	t0039	3625	1	1	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0040	3623	1	0	1	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0041	3621	1	0	0	1	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0042	3619	1	1	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0043	3623	1	0	0	1	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0044	3629	1	1	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0045	3627	1	1	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0046	3637	1	1	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0047	3637	1	1	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0048	3635	1	1	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0049	3625	1	1	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0050	3621	1	1	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0051	3621	1	1	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0052	3625	1	1	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0053	3623	1	1	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0054	3623	1	1	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0055	3621	1	0	0	0	0	1	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0056	3619	1	1	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0057	3619	1	0	0	0	0	1	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0058	3621	1	0	0	1	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0059	3625	1	1	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	t0060	3615	1	1	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK3_chr19_17819782_17852982	1/0	t0001	2012	58	3	19	15	8	12	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0002	2012	47	1	19	17	1	9	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0003	2012	34	6	7	14	2	5	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0004	2012	20	7	3	8	1	1	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0005	2012	17	6	3	8	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0006	2011	16	0	1	15	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0007	2011	14	0	1	12	0	1	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0008	2012	13	7	2	3	0	1	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0009	2011	11	0	0	11	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/1	t0010	2013	10	5	4	0	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0011	2012	9	0	0	9	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0012	2012	8	0	5	1	1	1	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0013	2012	8	0	0	6	0	2	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0014	2012	8	0	0	8	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0015	2011	8	0	0	7	0	1	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0016	2012	6	0	2	3	1	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0017	2013	6	1	0	4	0	1	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0018	2017	6	6	0	0	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0019	2012	6	3	0	3	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0020	2012	5	0	0	5	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0021	2012	4	0	0	2	0	2	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0022	2013	4	0	0	2	0	2	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0023	2013	4	4	0	0	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0024	2013	3	2	1	0	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0025	2013	3	1	1	0	0	1	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0026	2017	3	3	0	0	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0027	2013	3	2	1	0	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0028	2017	2	2	0	0	0	0	copy fasta	JAK3	chr19	17819782	17852982