JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
JAK3_chr19_17819782_17852982	0/0	t0079	2013	1	1	0	0	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0080	2013	1	1	0	0	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0081	2013	1	1	0	0	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0082	2014	1	0	1	0	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0083	2014	1	1	0	0	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0084	2011	1	0	1	0	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0085	2012	1	0	0	0	1	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0086	2011	1	1	0	0	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0087	2016	1	1	0	0	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0088	2012	1	0	0	1	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0089	2012	1	0	0	1	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0090	2013	1	1	0	0	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	t0091	2014	1	1	0	0	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAKMIP1_chr4_6021199_6205549	1/0	t0001	474	219	74	39	69	13	23	copy fasta	JAKMIP1	chr4	6021199	6205549
JAKMIP1_chr4_6021199_6205549	0/0	t0002	474	8	2	2	1	0	3	copy fasta	JAKMIP1	chr4	6021199	6205549
JAKMIP1_chr4_6021199_6205549	0/0	t0003	474	2	2	0	0	0	0	copy fasta	JAKMIP1	chr4	6021199	6205549
JAKMIP1_chr4_6021199_6205549	0/0	t0004	474	2	1	0	0	1	0	copy fasta	JAKMIP1	chr4	6021199	6205549
JAKMIP1_chr4_6021199_6205549	0/0	t0005	474	1	0	1	0	0	0	copy fasta	JAKMIP1	chr4	6021199	6205549
JAKMIP1_chr4_6021199_6205549	0/0	t0006	474	1	1	0	0	0	0	copy fasta	JAKMIP1	chr4	6021199	6205549
JAKMIP2_chr5_147580438_147787728	0/0	t0001	6686	57	19	5	28	3	2	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0002	6686	21	2	7	9	0	3	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0003	6693	13	0	1	10	1	1	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	1/0	t0004	6691	9	8	0	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0005	6695	9	0	0	8	0	1	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0006	6687	7	1	3	3	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0007	6687	6	0	3	0	2	1	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0008	6696	6	0	0	6	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0009	6684	5	0	0	5	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0010	6682	5	1	4	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0011	6689	5	5	0	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0012	6699	4	0	0	4	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0013	6686	4	0	2	0	2	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0014	6705	4	0	0	4	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0015	6692	4	2	1	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/1	t0016	6684	3	0	1	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0017	6697	3	3	0	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0018	6705	3	0	0	3	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0019	6692	3	0	0	3	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0020	6686	2	0	2	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0021	6689	2	0	0	2	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0022	6687	2	0	2	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0023	6689	2	0	0	2	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0024	6686	2	0	0	1	0	1	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0025	6701	2	0	0	2	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0026	6687	2	0	1	0	0	1	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0027	6697	2	2	0	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0028	6686	1	1	0	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0029	6686	1	0	0	0	0	1	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0030	6686	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0031	6690	1	1	0	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728