JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
JAKMIP2_chr5_147580438_147787728	0/0	t0032	6699	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0033	6689	1	1	0	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0034	6694	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0035	6689	1	0	1	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0036	6686	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0037	6686	1	0	1	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0038	6688	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0039	6686	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0040	6686	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0041	6686	1	1	0	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0042	6687	1	0	0	0	0	1	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0043	6685	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0044	6688	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0045	6686	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0046	6686	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0047	6686	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0048	6688	1	1	0	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0049	6687	1	1	0	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0050	6687	1	1	0	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0051	6689	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0052	6687	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0053	6687	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0054	6686	1	1	0	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0055	6687	1	0	0	0	1	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0056	6688	1	0	0	0	0	1	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0057	6683	1	0	0	0	1	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0058	6691	1	1	0	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0059	6689	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0060	6688	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0061	6687	1	1	0	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0062	6687	1	0	0	0	0	1	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0063	6686	1	0	1	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0064	6692	1	1	0	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0065	6691	1	0	1	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0066	6687	1	0	1	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0067	6687	1	0	1	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0068	6699	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0069	6694	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0070	6689	1	0	1	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0071	6687	1	0	1	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0072	6699	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0073	6695	1	1	0	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0074	6705	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0075	6702	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0076	6700	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0077	6694	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0078	6690	1	0	1	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0079	6692	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0080	6693	1	1	0	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0081	6693	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728