JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
JAKMIP2_chr5_147580438_147787728	0/0	t0082	6694	1	1	0	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0083	6692	1	1	0	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0084	6695	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0085	6695	1	0	1	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0086	6693	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0087	6692	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0088	6695	1	0	0	0	0	1	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0089	6693	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	t0090	6693	1	0	0	0	0	1	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP3_chr10_132060946_132189858	0/0	t0001	3839	41	1	10	19	4	7	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0002	3859	29	6	0	19	0	4	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	1/0	t0003	3859	20	8	5	4	1	1	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0004	3859	8	0	5	0	1	2	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0005	3859	7	4	1	1	0	1	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0006	3859	4	4	0	0	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0007	3860	4	0	3	0	0	1	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0008	3859	3	3	0	0	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0009	3839	3	3	0	0	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0010	3842	3	2	0	1	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0011	3860	3	0	1	0	1	1	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0012	3859	2	0	0	2	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0013	3858	2	2	0	0	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0014	3859	2	2	0	0	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0015	3859	2	1	1	0	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0016	3839	1	0	0	0	0	1	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0017	3859	1	1	0	0	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0018	3873	1	0	0	0	0	1	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0019	3883	1	0	1	0	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0020	3861	1	0	1	0	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0021	3859	1	0	0	1	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/1	t0022	3839	1	0	0	0	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0023	3859	1	1	0	0	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0024	3859	1	1	0	0	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0025	3811	1	1	0	0	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0026	3839	1	1	0	0	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0027	3839	1	1	0	0	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0028	3856	1	0	0	1	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0029	3859	1	0	0	1	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0030	3859	1	1	0	0	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0031	3859	1	1	0	0	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0032	3859	1	1	0	0	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0033	3860	1	0	1	0	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0034	3860	1	0	0	0	1	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0035	3859	1	0	0	1	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0036	3859	1	0	1	0	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0037	3859	1	1	0	0	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0038	3859	1	0	0	0	0	1	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0039	3859	1	1	0	0	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	t0040	3859	1	1	0	0	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAM2_chr21_25634258_25722562	0/1	t0001	3456	90	9	19	46	3	12	copy fasta	JAM2	chr21	25634258	25722562