JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
JAM2_chr21_25634258_25722562	0/0	t0002	3451	48	5	5	31	1	6	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0003	3457	47	3	3	33	3	5	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0004	3455	20	10	3	1	1	5	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	1/0	t0005	3455	13	7	1	4	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0006	3459	12	12	0	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0007	3457	10	9	1	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0008	3455	9	2	0	7	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0009	3455	6	6	0	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0010	3455	5	0	3	0	2	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0011	3455	5	2	1	2	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0012	3456	4	0	1	3	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0013	3455	4	2	0	2	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0014	3451	4	0	3	1	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0015	3456	3	0	2	0	0	1	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0016	3456	3	1	1	1	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0017	3456	3	3	0	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0018	3455	3	0	2	1	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0019	3456	3	3	0	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0020	3451	3	0	3	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0021	3457	2	0	0	2	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0022	3456	2	0	0	2	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0023	3457	2	2	0	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0024	3455	2	2	0	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0025	3455	2	2	0	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0026	3457	2	1	0	1	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0027	3457	2	1	1	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0028	3456	1	0	0	0	0	1	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0029	3459	1	0	1	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0030	3455	1	0	0	1	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0031	3457	1	0	0	1	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0032	3451	1	0	0	1	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0033	3455	1	1	0	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0034	3457	1	1	0	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0035	3456	1	0	0	1	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0036	3457	1	1	0	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0037	3457	1	1	0	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0038	3451	1	0	0	0	0	1	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0039	3456	1	1	0	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0040	3455	1	1	0	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0041	3457	1	1	0	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0042	3456	1	0	0	0	0	1	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0043	3456	1	0	0	1	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0044	3456	1	1	0	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0045	3457	1	1	0	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	t0046	3455	1	1	0	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM3_chr11_134064072_134157001	0/0	t0001	2833	62	3	2	46	0	11	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0002	2837	60	4	10	38	1	7	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	1/0	t0003	2833	46	8	12	12	5	8	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0004	2837	41	1	16	22	0	2	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0005	2834	15	0	0	15	0	0	copy fasta	JAM3	chr11	134064072	134157001