JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
JAM3_chr11_134064072_134157001	0/0	t0006	2833	13	7	2	1	1	2	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0007	2833	12	5	5	0	2	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0008	2835	11	10	1	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0009	2837	11	0	6	5	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0010	2833	11	2	2	6	0	1	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0011	2837	9	0	6	3	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0012	2833	7	0	0	7	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0013	2833	6	6	0	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0014	2837	5	5	0	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0015	2833	4	3	1	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0016	2834	4	3	1	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0017	2832	3	2	0	1	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0018	2833	3	1	0	0	1	1	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0019	2837	3	0	1	0	0	2	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0020	2833	3	3	0	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0021	2833	3	2	1	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0022	2833	2	2	0	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0023	2832	2	2	0	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0024	2834	2	2	0	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0025	2833	2	0	2	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0026	2833	2	0	2	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0027	2834	2	2	0	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0028	2837	2	2	0	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0029	2837	2	0	2	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0030	2837	2	0	0	2	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0031	2832	2	1	1	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0032	2833	2	2	0	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0033	2833	1	0	0	1	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0034	2833	1	1	0	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0035	2837	1	0	1	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0036	2835	1	1	0	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0037	2835	1	1	0	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0038	2833	1	0	0	0	1	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0039	2834	1	1	0	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0040	2837	1	0	0	1	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0041	2832	1	0	0	0	0	1	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0042	2833	1	0	0	1	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0043	2833	1	1	0	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0044	2833	1	0	0	1	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0045	2837	1	0	0	0	1	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0046	2833	1	1	0	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0047	2833	1	0	0	0	0	1	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0048	2837	1	0	0	0	0	1	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0049	2834	1	1	0	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0050	2834	1	0	0	1	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0051	2833	1	0	0	1	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0052	2833	1	0	0	1	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0053	2837	1	0	1	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0054	2837	1	0	0	0	0	1	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0055	2838	1	0	0	1	0	0	copy fasta	JAM3	chr11	134064072	134157001