Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANKS4B_chr16_21228699_21258850	0/0	t0022	3069	1	1	0	0	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0023	3068	1	1	0	0	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0024	3070	1	1	0	0	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0025	3070	1	0	0	0	0	1	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0026	3068	1	0	0	0	0	1	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0027	3068	1	0	0	1	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0028	3069	1	0	0	0	0	1	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0029	3069	1	0	0	1	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0030	3070	1	0	0	1	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0031	3070	1	0	0	1	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0032	3069	1	1	0	0	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0033	3070	1	0	0	1	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0034	3069	1	0	0	1	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0035	3068	1	0	1	0	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0036	3069	1	1	0	0	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0037	3068	1	0	0	1	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0038	3069	1	0	0	1	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0039	3069	1	0	0	1	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0040	3071	1	0	1	0	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0041	3071	1	0	0	1	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0042	3070	1	1	0	0	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0043	3071	1	0	0	1	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0044	3069	1	0	0	1	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0045	3069	1	1	0	0	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0046	3070	1	1	0	0	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	t0047	3069	1	1	0	0	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS6_chr9_98727009_98801555	0/0	t0001	4575	120	21	34	46	3	16	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	1/0	t0002	4575	91	9	10	57	5	9	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0003	4575	58	0	10	42	1	5	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0004	4575	12	12	0	0	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0005	4575	9	9	0	0	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0006	4575	6	5	1	0	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0007	4575	5	4	1	0	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/1	t0008	4575	4	0	1	0	0	2	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0009	4575	4	4	0	0	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0010	4575	4	1	0	3	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0011	4575	3	2	1	0	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0012	4575	3	3	0	0	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0013	4575	3	3	0	0	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0014	4575	2	2	0	0	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0015	4575	2	1	1	0	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0016	4575	2	0	0	0	0	2	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0017	4575	1	0	1	0	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0018	4575	1	1	0	0	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0019	4575	1	0	0	1	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0020	4575	1	1	0	0	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0021	4575	1	0	0	0	0	1	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0022	4575	1	0	0	1	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0023	4575	1	0	0	1	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0024	4575	1	0	0	1	0	0	copy fasta	ANKS6	chr9	98727009	98801555