JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
JAM3_chr11_134064072_134157001	0/0	t0056	2837	1	0	0	1	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0057	2834	1	0	0	1	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0058	2834	1	0	0	1	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0059	2832	1	1	0	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0060	2833	1	0	1	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0061	2833	1	0	1	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0062	2833	1	0	1	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0063	2833	1	1	0	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0064	2837	1	0	0	1	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0065	2837	1	0	0	0	0	1	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/1	t0066	2832	1	0	0	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0067	2833	1	1	0	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	t0068	2833	1	0	0	0	0	1	copy fasta	JAM3	chr11	134064072	134157001
JAML_chr11_118188725_118230011	0/1	t0001	692	182	47	26	82	5	21	copy fasta	JAML	chr11	118188725	118230011
JAML_chr11_118188725_118230011	1/0	t0002	692	163	30	38	73	7	14	copy fasta	JAML	chr11	118188725	118230011
JAML_chr11_118188725_118230011	0/0	t0003	692	12	0	0	12	0	0	copy fasta	JAML	chr11	118188725	118230011
JAML_chr11_118188725_118230011	0/0	t0004	692	7	6	1	0	0	0	copy fasta	JAML	chr11	118188725	118230011
JAML_chr11_118188725_118230011	0/0	t0005	692	4	4	0	0	0	0	copy fasta	JAML	chr11	118188725	118230011
JAML_chr11_118188725_118230011	0/0	t0006	692	2	1	1	0	0	0	copy fasta	JAML	chr11	118188725	118230011
JAML_chr11_118188725_118230011	0/0	t0007	692	1	1	0	0	0	0	copy fasta	JAML	chr11	118188725	118230011
JAML_chr11_118188725_118230011	0/0	t0008	692	1	0	0	1	0	0	copy fasta	JAML	chr11	118188725	118230011
JAML_chr11_118188725_118230011	0/0	t0009	692	1	1	0	0	0	0	copy fasta	JAML	chr11	118188725	118230011
JAML_chr11_118188725_118230011	0/0	t0010	692	1	0	0	0	0	1	copy fasta	JAML	chr11	118188725	118230011
JARID2_chr6_15241069_15527042	0/0	t0001	2266	87	11	19	36	5	16	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0002	2265	61	26	7	24	0	4	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0003	2263	20	1	2	14	0	3	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/1	t0004	2265	15	3	4	0	2	5	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0005	2264	14	8	3	3	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0006	2267	12	11	1	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0007	2267	8	2	0	6	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	1/0	t0008	2263	8	2	0	5	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0009	2265	6	3	2	1	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0010	2264	6	3	2	1	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0011	2267	4	3	0	1	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0012	2266	3	2	1	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0013	2267	3	0	0	3	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0014	2268	2	1	0	0	0	1	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0015	2266	2	2	0	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0016	2265	2	2	0	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0017	2265	2	0	0	2	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0018	2266	2	0	1	0	1	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0019	2265	1	1	0	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0020	2267	1	0	0	1	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0021	2266	1	0	0	1	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0022	2265	1	0	1	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0023	2269	1	1	0	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0024	2263	1	1	0	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0025	2267	1	0	0	1	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0026	2266	1	0	0	1	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0027	2266	1	0	0	1	0	0	copy fasta	JARID2	chr6	15241069	15527042