JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
JARID2_chr6_15241069_15527042	0/0	t0028	2265	1	0	1	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0029	2265	1	0	0	1	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0030	2266	1	1	0	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0031	2265	1	0	0	0	0	1	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0032	2266	1	0	0	1	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0033	2266	1	1	0	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0034	2262	1	0	0	1	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0035	2263	1	0	0	1	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0036	2262	1	0	0	1	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0037	2261	1	0	0	1	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0038	2268	1	1	0	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0039	2265	1	1	0	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0040	2263	1	1	0	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0041	2264	1	1	0	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0042	2265	1	0	0	0	0	1	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0043	2266	1	0	0	0	0	1	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0044	2264	1	0	0	1	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	t0045	2265	1	1	0	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JAZF1_chr7_27825577_28185795	1/0	t0001	2442	117	40	28	29	8	11	copy fasta	JAZF1	chr7	27825577	28185795
JAZF1_chr7_27825577_28185795	0/0	t0002	2442	62	27	8	17	1	9	copy fasta	JAZF1	chr7	27825577	28185795
JAZF1_chr7_27825577_28185795	0/0	t0003	2442	4	2	1	0	1	0	copy fasta	JAZF1	chr7	27825577	28185795
JAZF1_chr7_27825577_28185795	0/0	t0004	2446	3	3	0	0	0	0	copy fasta	JAZF1	chr7	27825577	28185795
JAZF1_chr7_27825577_28185795	0/0	t0005	2442	2	1	1	0	0	0	copy fasta	JAZF1	chr7	27825577	28185795
JAZF1_chr7_27825577_28185795	0/0	t0006	2446	2	2	0	0	0	0	copy fasta	JAZF1	chr7	27825577	28185795
JAZF1_chr7_27825577_28185795	0/0	t0007	2442	1	1	0	0	0	0	copy fasta	JAZF1	chr7	27825577	28185795
JAZF1_chr7_27825577_28185795	0/0	t0008	2442	1	0	0	1	0	0	copy fasta	JAZF1	chr7	27825577	28185795
JAZF1_chr7_27825577_28185795	0/0	t0009	2446	1	1	0	0	0	0	copy fasta	JAZF1	chr7	27825577	28185795
JAZF1_chr7_27825577_28185795	0/0	t0010	2442	1	0	0	1	0	0	copy fasta	JAZF1	chr7	27825577	28185795
JAZF1_chr7_27825577_28185795	0/0	t0011	2442	1	1	0	0	0	0	copy fasta	JAZF1	chr7	27825577	28185795
JAZF1_chr7_27825577_28185795	0/0	t0012	2442	1	1	0	0	0	0	copy fasta	JAZF1	chr7	27825577	28185795
JAZF1_chr7_27825577_28185795	0/0	t0013	2442	1	0	1	0	0	0	copy fasta	JAZF1	chr7	27825577	28185795
JAZF1_chr7_27825577_28185795	0/0	t0014	2442	1	0	1	0	0	0	copy fasta	JAZF1	chr7	27825577	28185795
JAZF1_chr7_27825577_28185795	0/0	t0015	2442	1	1	0	0	0	0	copy fasta	JAZF1	chr7	27825577	28185795
JAZF1_chr7_27825577_28185795	0/0	t0016	2442	1	1	0	0	0	0	copy fasta	JAZF1	chr7	27825577	28185795
JAZF1_chr7_27825577_28185795	0/0	t0017	2442	1	1	0	0	0	0	copy fasta	JAZF1	chr7	27825577	28185795
JAZF1_chr7_27825577_28185795	0/0	t0018	2442	1	1	0	0	0	0	copy fasta	JAZF1	chr7	27825577	28185795
JAZF1_chr7_27825577_28185795	0/0	t0019	2442	1	0	1	0	0	0	copy fasta	JAZF1	chr7	27825577	28185795
JAZF1_chr7_27825577_28185795	0/0	t0020	2442	1	1	0	0	0	0	copy fasta	JAZF1	chr7	27825577	28185795
JAZF1_chr7_27825577_28185795	0/1	t0021	2442	1	0	0	0	0	0	copy fasta	JAZF1	chr7	27825577	28185795
JAZF1_chr7_27825577_28185795	0/0	t0022	2456	1	0	1	0	0	0	copy fasta	JAZF1	chr7	27825577	28185795
JCAD_chr10_30007803_30064586	0/0	t0001	5241	80	6	27	34	5	8	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	1/0	t0002	5245	69	0	8	42	3	15	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/1	t0003	5244	57	6	17	29	2	2	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0004	5241	23	20	3	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0005	5245	19	1	0	16	0	2	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0006	5245	12	0	1	9	1	1	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0007	5236	7	6	1	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0008	5245	7	0	1	6	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0009	5245	5	0	2	3	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0010	5240	5	5	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586