JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
JCAD_chr10_30007803_30064586	0/0	t0011	5236	5	5	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0012	5245	4	0	0	4	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0013	5246	4	4	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0014	5244	4	0	0	4	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0015	5245	4	0	1	3	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0016	5244	3	3	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0017	5246	3	3	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0018	5245	3	0	0	1	1	1	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0019	5241	3	3	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0020	5241	3	2	1	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0021	5241	3	3	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0022	5241	3	3	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0023	5241	3	3	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0024	5241	3	3	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0025	5241	3	0	2	1	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0026	5241	2	2	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0027	5245	2	0	0	2	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0028	5245	2	0	0	2	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0029	5245	2	0	0	2	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0030	5244	2	0	0	2	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0031	5245	2	2	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0032	5241	2	2	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0033	5241	2	2	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0034	5245	2	0	0	2	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0035	5240	2	2	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0036	5244	2	2	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0037	5241	2	0	2	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0038	5241	2	0	0	2	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0039	5245	2	1	1	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0040	5245	2	0	0	2	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0041	5241	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0042	5245	1	0	0	0	0	1	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0043	5245	1	0	0	1	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0044	5245	1	0	0	1	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0045	5245	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0046	5245	1	0	0	1	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0047	5245	1	0	0	1	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0048	5244	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0049	5245	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0050	5245	1	0	1	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0051	5245	1	0	0	0	0	1	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0052	5244	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0053	5244	1	0	1	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0054	5244	1	0	1	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0055	5244	1	0	0	1	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0056	5244	1	0	0	0	1	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0057	5245	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0058	5241	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0059	5241	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0060	5240	1	0	1	0	0	0	copy fasta	JCAD	chr10	30007803	30064586