JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
JCAD_chr10_30007803_30064586	0/0	t0061	5241	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0062	5245	1	0	0	1	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0063	5244	1	0	0	1	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0064	5244	1	0	0	1	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0065	5245	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0066	5240	1	0	0	0	0	1	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0067	5241	1	0	0	1	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0068	5241	1	0	0	0	1	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0069	5245	1	0	0	1	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0070	5245	1	0	0	1	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0071	5246	1	0	1	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0072	5241	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	t0073	5245	1	0	0	1	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCHAIN_chr4_70650541_70671508	0/1	t0001	807	237	44	54	94	10	34	copy fasta	JCHAIN	chr4	70650541	70671508
JCHAIN_chr4_70650541_70671508	1/0	t0002	807	68	7	1	57	0	2	copy fasta	JCHAIN	chr4	70650541	70671508
JCHAIN_chr4_70650541_70671508	0/0	t0003	807	16	13	3	0	0	0	copy fasta	JCHAIN	chr4	70650541	70671508
JCHAIN_chr4_70650541_70671508	0/0	t0004	806	8	4	1	1	0	2	copy fasta	JCHAIN	chr4	70650541	70671508
JCHAIN_chr4_70650541_70671508	0/0	t0005	805	5	5	0	0	0	0	copy fasta	JCHAIN	chr4	70650541	70671508
JCHAIN_chr4_70650541_70671508	0/0	t0006	808	5	5	0	0	0	0	copy fasta	JCHAIN	chr4	70650541	70671508
JCHAIN_chr4_70650541_70671508	0/0	t0007	805	4	4	0	0	0	0	copy fasta	JCHAIN	chr4	70650541	70671508
JCHAIN_chr4_70650541_70671508	0/0	t0008	803	4	4	0	0	0	0	copy fasta	JCHAIN	chr4	70650541	70671508
JCHAIN_chr4_70650541_70671508	0/0	t0009	808	4	1	1	2	0	0	copy fasta	JCHAIN	chr4	70650541	70671508
JCHAIN_chr4_70650541_70671508	0/0	t0010	807	4	4	0	0	0	0	copy fasta	JCHAIN	chr4	70650541	70671508
JCHAIN_chr4_70650541_70671508	0/0	t0011	808	2	0	0	2	0	0	copy fasta	JCHAIN	chr4	70650541	70671508
JCHAIN_chr4_70650541_70671508	0/0	t0012	807	2	2	0	0	0	0	copy fasta	JCHAIN	chr4	70650541	70671508
JCHAIN_chr4_70650541_70671508	0/0	t0013	807	1	0	0	0	0	1	copy fasta	JCHAIN	chr4	70650541	70671508
JCHAIN_chr4_70650541_70671508	0/0	t0014	807	1	1	0	0	0	0	copy fasta	JCHAIN	chr4	70650541	70671508
JCHAIN_chr4_70650541_70671508	0/0	t0015	805	1	1	0	0	0	0	copy fasta	JCHAIN	chr4	70650541	70671508
JCHAIN_chr4_70650541_70671508	0/0	t0016	808	1	0	0	1	0	0	copy fasta	JCHAIN	chr4	70650541	70671508
JCHAIN_chr4_70650541_70671508	0/0	t0017	809	1	0	0	1	0	0	copy fasta	JCHAIN	chr4	70650541	70671508
JCHAIN_chr4_70650541_70671508	0/0	t0018	808	1	1	0	0	0	0	copy fasta	JCHAIN	chr4	70650541	70671508
JCHAIN_chr4_70650541_70671508	0/0	t0019	809	1	0	0	0	0	1	copy fasta	JCHAIN	chr4	70650541	70671508
JDP2_chr14_75423022_75479107	0/0	t0001	4887	76	25	9	36	3	3	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0002	4887	66	4	15	38	3	6	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0003	4887	35	0	3	28	0	4	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	1/1	t0004	4887	32	2	10	16	0	2	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0005	4887	24	5	5	10	0	4	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0006	4887	9	4	1	3	0	1	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0007	4887	8	0	2	0	3	3	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0008	4887	7	3	1	1	2	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0009	4887	7	0	5	0	1	1	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0010	4887	6	3	2	1	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0011	4887	6	1	3	1	0	1	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0012	4887	6	6	0	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0013	4887	6	6	0	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0014	4886	4	4	0	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0015	4887	4	4	0	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0016	4887	3	0	3	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0017	4887	3	0	0	0	0	3	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0018	4886	2	0	0	2	0	0	copy fasta	JDP2	chr14	75423022	75479107