JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
JDP2_chr14_75423022_75479107	0/0	t0019	4887	2	2	0	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0020	4887	2	0	0	0	0	2	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0021	4887	2	1	0	0	0	1	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0022	4887	2	1	1	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0023	4886	2	0	0	2	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0024	4886	2	1	0	1	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0025	4887	2	0	2	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0026	4887	2	0	0	1	0	1	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0027	4887	2	2	0	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0028	4887	2	1	1	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0029	4886	1	1	0	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0030	4886	1	1	0	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0031	4887	1	0	1	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0032	4887	1	0	0	0	0	1	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0033	4886	1	0	1	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0034	4886	1	0	0	0	1	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0035	4887	1	0	1	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0036	4887	1	0	0	1	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0037	4887	1	0	0	0	0	1	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0038	4886	1	1	0	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0039	4887	1	1	0	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0040	4887	1	0	0	1	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0041	4887	1	0	0	0	1	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0042	4887	1	0	0	0	0	1	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0043	4887	1	0	0	0	1	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0044	4886	1	0	0	1	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0045	4887	1	0	0	1	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0046	4886	1	1	0	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0047	4886	1	1	0	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0048	4887	1	0	1	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0049	4887	1	0	0	1	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0050	4887	1	1	0	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0051	4887	1	1	0	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0052	4887	1	1	0	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0053	4887	1	1	0	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0054	4887	1	0	0	1	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0055	4887	1	0	0	0	1	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0056	4887	1	1	0	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0057	4887	1	1	0	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0058	4887	1	0	0	1	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0059	4887	1	0	1	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0060	4887	1	0	0	1	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0061	4814	1	1	0	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	t0062	4887	1	0	0	0	0	1	copy fasta	JDP2	chr14	75423022	75479107
JHY_chr11_122877759_122968862	1/0	t0001	4721	108	14	17	58	5	13	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/1	t0002	4722	59	13	17	13	6	9	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0003	4722	49	5	4	32	3	5	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0004	4723	24	8	1	12	0	3	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0005	4720	22	0	1	15	0	6	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0006	4721	17	13	0	4	0	0	copy fasta	JHY	chr11	122877759	122968862