JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
JHY_chr11_122877759_122968862	0/0	t0007	4722	9	9	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0008	4722	4	4	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0009	4721	4	2	2	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0010	4722	3	3	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0011	4721	3	3	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0012	4723	2	0	0	2	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0013	4723	2	2	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0014	4721	2	2	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0015	4721	2	0	0	0	0	2	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0016	4722	1	1	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0017	4722	1	1	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0018	4721	1	1	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0019	4722	1	1	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0020	4722	1	0	1	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0021	4723	1	1	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0022	4722	1	1	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0023	4722	1	1	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0024	4721	1	1	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0025	4721	1	1	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0026	4721	1	1	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0027	4721	1	1	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0028	4721	1	1	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0029	4721	1	0	0	0	0	1	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0030	4721	1	0	0	1	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0031	4721	1	1	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0032	4721	1	1	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0033	4721	1	0	0	1	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0034	4721	1	0	0	1	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0035	4721	1	0	1	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0036	4721	1	0	0	1	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	t0037	4722	1	0	0	0	0	1	copy fasta	JHY	chr11	122877759	122968862
JKAMP_chr14_59479517_59510410	0/0	t0001	1412	184	29	37	94	7	17	copy fasta	JKAMP	chr14	59479517	59510410
JKAMP_chr14_59479517_59510410	0/1	t0002	1412	119	31	29	40	3	15	copy fasta	JKAMP	chr14	59479517	59510410
JKAMP_chr14_59479517_59510410	0/0	t0003	1412	29	19	5	0	2	3	copy fasta	JKAMP	chr14	59479517	59510410
JKAMP_chr14_59479517_59510410	1/0	t0004	1412	8	7	0	0	0	0	copy fasta	JKAMP	chr14	59479517	59510410
JKAMP_chr14_59479517_59510410	0/0	t0005	1412	6	0	4	0	2	0	copy fasta	JKAMP	chr14	59479517	59510410
JKAMP_chr14_59479517_59510410	0/0	t0006	1437	6	6	0	0	0	0	copy fasta	JKAMP	chr14	59479517	59510410
JKAMP_chr14_59479517_59510410	0/0	t0007	1412	2	2	0	0	0	0	copy fasta	JKAMP	chr14	59479517	59510410
JKAMP_chr14_59479517_59510410	0/0	t0008	1412	1	0	1	0	0	0	copy fasta	JKAMP	chr14	59479517	59510410
JKAMP_chr14_59479517_59510410	0/0	t0009	1412	1	0	0	1	0	0	copy fasta	JKAMP	chr14	59479517	59510410
JKAMP_chr14_59479517_59510410	0/0	t0010	1412	1	0	0	0	0	1	copy fasta	JKAMP	chr14	59479517	59510410
JKAMP_chr14_59479517_59510410	0/0	t0011	1412	1	0	0	1	0	0	copy fasta	JKAMP	chr14	59479517	59510410
JMJD1C_chr10_63162225_63470977	1/1	t0001	1136	278	64	49	131	11	21	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	t0002	1136	25	3	9	2	5	6	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	t0003	1129	3	0	0	3	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	t0004	1136	1	1	0	0	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	t0005	1129	1	0	0	1	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	t0006	1136	1	0	0	1	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	t0007	1136	1	0	0	0	0	1	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD4_chr1_227726191_227740302	0/0	t0001	1231	234	38	41	131	6	18	copy fasta	JMJD4	chr1	227726191	227740302