JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
JMJD4_chr1_227726191_227740302	1/1	t0002	1231	92	8	21	41	4	16	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	t0003	1231	88	38	17	17	6	10	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	t0004	1231	5	5	0	0	0	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	t0005	1231	3	0	1	0	1	1	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	t0006	1231	2	0	0	2	0	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	t0007	1231	2	0	0	1	0	1	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	t0008	1231	2	2	0	0	0	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	t0009	1231	1	1	0	0	0	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	t0010	1231	1	0	0	0	0	1	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	t0011	1231	1	0	0	1	0	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	t0012	1231	1	1	0	0	0	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	t0013	1231	1	1	0	0	0	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	t0014	1231	1	0	0	0	0	1	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	t0015	1231	1	0	0	1	0	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	t0016	1231	1	0	0	0	1	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD6_chr17_76713451_76731606	1/1	t0001	410	437	97	78	203	13	44	copy fasta	JMJD6	chr17	76713451	76731606
JMJD6_chr17_76713451_76731606	0/0	t0002	410	1	1	0	0	0	0	copy fasta	JMJD6	chr17	76713451	76731606
JMJD6_chr17_76713451_76731606	0/0	t0003	410	1	0	0	0	1	0	copy fasta	JMJD6	chr17	76713451	76731606
JMJD6_chr17_76713451_76731606	0/0	t0004	410	1	0	0	1	0	0	copy fasta	JMJD6	chr17	76713451	76731606
JMJD7_chr15_41823092_41842581	1/0	t0001	459	193	48	31	83	7	23	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/1	t0002	459	181	37	44	67	9	23	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	t0003	459	4	4	0	0	0	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	t0004	459	2	2	0	0	0	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	t0005	459	1	0	0	1	0	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	t0006	459	1	1	0	0	0	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	t0007	459	1	0	0	0	0	1	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	t0008	459	1	0	1	0	0	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	t0009	459	1	0	0	0	0	1	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	t0010	459	1	0	0	1	0	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD8_chr16_676670_689334	0/0	t0001	1139	170	32	19	96	3	20	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	1/1	t0002	1140	118	26	32	40	6	12	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	t0003	1139	24	11	3	8	0	2	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	t0004	1139	21	7	2	0	2	10	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	t0005	1139	11	10	1	0	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	t0006	1139	3	3	0	0	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	t0007	1139	2	2	0	0	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	t0008	1139	2	2	0	0	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	t0009	1140	2	0	2	0	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	t0010	1139	2	0	0	2	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	t0011	1139	2	2	0	0	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	t0012	1139	1	0	0	0	0	1	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	t0013	1140	1	0	1	0	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	t0014	1140	1	0	1	0	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	t0015	1140	1	0	0	0	1	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	t0016	1140	1	0	0	0	0	1	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	t0017	1139	1	1	0	0	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	t0018	1140	1	0	1	0	0	0	copy fasta	JMJD8	chr16	676670	689334
JMY_chr5_79231131_79332211	0/0	t0001	6130	85	4	22	41	6	12	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/1	t0002	6125	66	17	11	27	5	5	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0003	6125	39	6	10	14	1	8	copy fasta	JMY	chr5	79231131	79332211