JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
JMY_chr5_79231131_79332211	0/0	t0004	6126	25	11	2	11	0	1	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0005	6119	19	1	0	14	1	3	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0006	6129	16	0	0	14	0	2	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0007	6126	12	0	0	12	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0008	6129	11	11	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0009	6126	9	9	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0010	6136	4	0	0	4	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0011	6130	4	4	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0012	6130	3	0	0	3	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0013	6126	3	3	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0014	6130	2	2	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0015	6126	2	2	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0016	6125	2	0	0	2	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0017	6126	2	2	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0018	6130	2	0	1	0	0	1	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0019	6126	2	2	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0020	6125	2	0	2	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0021	6126	2	1	1	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0022	6130	1	0	0	0	0	1	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0023	6130	1	1	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0024	6125	1	0	0	1	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0025	6125	1	0	0	0	1	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0026	6126	1	1	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0027	6125	1	1	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0028	6126	1	1	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0029	6130	1	1	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0030	6127	1	1	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0031	6126	1	1	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0032	6125	1	0	0	0	1	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0033	6126	1	0	1	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0034	6126	1	0	0	1	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0035	6125	1	0	0	0	1	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0036	6122	1	0	0	0	0	1	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0037	6126	1	1	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0038	6126	1	1	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0039	6119	1	1	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	1/0	t0040	6130	1	0	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0041	6129	1	1	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0042	6125	1	0	1	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0043	6126	1	1	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0044	6130	1	0	0	1	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0045	6126	1	1	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0046	6130	1	0	1	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0047	6129	1	0	0	1	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0048	6130	1	0	1	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0049	6130	1	0	1	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0050	6130	1	0	0	0	0	1	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	t0051	6130	1	0	0	0	0	1	copy fasta	JMY	chr5	79231131	79332211
JOSD1_chr22_38680543_38705943	1/0	t0001	3135	134	15	28	63	4	23	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	t0002	3135	123	46	5	61	2	9	copy fasta	JOSD1	chr22	38680543	38705943