JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
JOSD1_chr22_38680543_38705943	0/1	t0003	3135	46	1	7	33	1	3	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	t0004	3135	14	6	7	0	0	1	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	t0005	3135	13	3	6	1	0	3	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	t0006	3135	7	1	4	0	1	1	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	t0007	3135	6	6	0	0	0	0	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	t0008	3135	5	5	0	0	0	0	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	t0009	3135	5	0	0	5	0	0	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	t0010	3133	3	3	0	0	0	0	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	t0011	3135	3	3	0	0	0	0	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	t0012	3135	2	0	0	0	0	2	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	t0013	3135	1	0	0	1	0	0	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	t0014	3135	1	0	0	1	0	0	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	t0015	3135	1	0	0	0	0	1	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	t0016	3135	1	0	1	0	0	0	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	t0017	3135	1	0	0	0	0	1	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	t0018	3135	1	0	1	0	0	0	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	t0019	3135	1	0	0	1	0	0	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	t0020	3135	1	1	0	0	0	0	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	t0021	3135	1	0	1	0	0	0	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	t0022	3135	1	0	0	1	0	0	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	t0023	3135	1	1	0	0	0	0	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	t0024	3135	1	1	0	0	0	0	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	t0025	3135	1	1	0	0	0	0	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	t0026	3135	1	1	0	0	0	0	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	t0027	3135	1	0	0	1	0	0	copy fasta	JOSD1	chr22	38680543	38705943
JOSD2_chr19_50500998_50516191	1/1	t0001	268	275	79	57	89	12	36	copy fasta	JOSD2	chr19	50500998	50516191
JOSD2_chr19_50500998_50516191	0/0	t0002	268	86	11	20	45	2	8	copy fasta	JOSD2	chr19	50500998	50516191
JOSD2_chr19_50500998_50516191	0/0	t0003	268	7	0	0	7	0	0	copy fasta	JOSD2	chr19	50500998	50516191
JOSD2_chr19_50500998_50516191	0/0	t0004	268	4	4	0	0	0	0	copy fasta	JOSD2	chr19	50500998	50516191
JOSD2_chr19_50500998_50516191	0/0	t0005	268	3	2	1	0	0	0	copy fasta	JOSD2	chr19	50500998	50516191
JOSD2_chr19_50500998_50516191	0/0	t0006	268	1	0	0	1	0	0	copy fasta	JOSD2	chr19	50500998	50516191
JPH1_chr8_74229700_74326540	0/0	t0001	2605	129	9	27	72	7	14	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	1/1	t0002	2605	58	2	8	34	2	10	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0003	2604	47	19	10	14	1	3	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0004	2603	16	15	1	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0005	2610	14	2	0	12	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0006	2604	9	7	2	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0007	2603	8	7	1	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0008	2602	6	4	0	1	1	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0009	2601	5	5	0	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0010	2601	4	2	2	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0011	2605	4	4	0	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0012	2604	3	3	0	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0013	2606	3	1	0	1	0	1	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0014	2602	2	1	0	1	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0015	2604	2	0	2	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0016	2604	2	0	0	2	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0017	2609	2	2	0	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0018	2610	1	1	0	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0019	2602	1	0	0	1	0	0	copy fasta	JPH1	chr8	74229700	74326540