JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
JPH1_chr8_74229700_74326540	0/0	t0020	2602	1	1	0	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0021	2605	1	0	0	1	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0022	2604	1	0	1	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0023	2604	1	0	1	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0024	2603	1	1	0	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0025	2604	1	0	0	0	1	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0026	2605	1	0	0	1	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0027	2605	1	0	1	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0028	2605	1	0	1	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0029	2605	1	1	0	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0030	2605	1	1	0	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0031	2605	1	0	1	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0032	2611	1	1	0	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	t0033	2604	1	1	0	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH2_chr20_44101590_44192188	0/0	t0001	7412	40	5	11	17	4	3	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0002	7412	25	4	2	13	2	4	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0003	7413	23	13	1	8	0	1	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0004	7413	14	0	4	6	1	3	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0005	7413	13	1	9	0	2	1	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0006	7413	11	4	4	1	1	1	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	1/0	t0007	7412	11	0	4	4	0	2	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0008	7415	9	8	1	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0009	7412	9	0	0	9	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0010	7413	8	0	0	8	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0011	7413	6	1	2	0	0	3	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0012	7412	6	0	2	2	0	2	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0013	7413	6	0	0	6	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0014	7415	6	3	0	3	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0015	7413	5	0	0	4	0	1	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0016	7415	4	1	0	3	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/1	t0017	7413	4	0	0	0	0	3	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0018	7413	4	0	0	4	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0019	7415	4	4	0	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0020	7413	4	0	1	1	0	2	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0021	7413	4	0	0	4	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0022	7411	3	3	0	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0023	7412	3	3	0	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0024	7411	3	2	0	1	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0025	7413	3	0	0	3	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0026	7412	3	0	0	3	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0027	7413	3	0	0	3	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0028	7411	3	0	1	0	1	1	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0029	7411	3	2	1	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0030	7413	3	0	3	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0031	7413	3	0	0	2	0	1	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0032	7413	3	0	2	0	1	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0033	7413	3	0	0	3	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0034	7412	3	3	0	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0035	7415	2	2	0	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0036	7413	2	0	0	2	0	0	copy fasta	JPH2	chr20	44101590	44192188