Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABHD2_chr15_89083456_89207355	0/0	t0016	7264	3	3	0	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0017	7147	2	1	1	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0018	7265	2	1	1	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0019	7146	2	0	0	0	0	2	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0020	7146	2	0	1	0	1	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0021	7146	2	2	0	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0022	7146	1	1	0	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0023	7147	1	1	0	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0024	7146	1	0	1	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0025	7146	1	0	1	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0026	7146	1	0	1	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0027	7146	1	0	0	1	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0028	7146	1	0	0	1	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0029	7146	1	0	1	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0030	7146	1	0	1	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0031	7146	1	1	0	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0032	7146	1	1	0	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0033	7146	1	1	0	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0034	7146	1	0	0	0	1	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0035	7147	1	0	0	0	0	1	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0036	7146	1	0	0	1	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0037	7146	1	0	0	1	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0038	7129	1	1	0	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0039	7146	1	1	0	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0040	7265	1	1	0	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	1/0	t0041	7147	1	0	0	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0042	7146	1	0	0	0	0	1	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0043	7146	1	0	0	0	0	1	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0044	7146	1	1	0	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	t0045	7146	1	1	0	0	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD3_chr18_21645901_21709774	1/1	t0001	800	146	28	27	60	9	20	copy fasta	ABHD3	chr18	21645901	21709774
ABHD3_chr18_21645901_21709774	0/0	t0002	810	106	35	23	38	0	10	copy fasta	ABHD3	chr18	21645901	21709774
ABHD3_chr18_21645901_21709774	0/0	t0003	820	15	2	0	9	0	4	copy fasta	ABHD3	chr18	21645901	21709774
ABHD3_chr18_21645901_21709774	0/0	t0004	820	8	0	2	6	0	0	copy fasta	ABHD3	chr18	21645901	21709774
ABHD3_chr18_21645901_21709774	0/0	t0005	830	8	7	1	0	0	0	copy fasta	ABHD3	chr18	21645901	21709774
ABHD3_chr18_21645901_21709774	0/0	t0006	806	3	0	0	0	1	2	copy fasta	ABHD3	chr18	21645901	21709774
ABHD3_chr18_21645901_21709774	0/0	t0007	840	3	2	1	0	0	0	copy fasta	ABHD3	chr18	21645901	21709774
ABHD3_chr18_21645901_21709774	0/0	t0008	800	2	2	0	0	0	0	copy fasta	ABHD3	chr18	21645901	21709774
ABHD3_chr18_21645901_21709774	0/0	t0009	810	2	0	0	2	0	0	copy fasta	ABHD3	chr18	21645901	21709774
ABHD3_chr18_21645901_21709774	0/0	t0010	830	2	2	0	0	0	0	copy fasta	ABHD3	chr18	21645901	21709774
ABHD3_chr18_21645901_21709774	0/0	t0011	850	2	2	0	0	0	0	copy fasta	ABHD3	chr18	21645901	21709774
ABHD3_chr18_21645901_21709774	0/0	t0012	800	1	0	1	0	0	0	copy fasta	ABHD3	chr18	21645901	21709774
ABHD3_chr18_21645901_21709774	0/0	t0013	800	1	1	0	0	0	0	copy fasta	ABHD3	chr18	21645901	21709774
ABHD3_chr18_21645901_21709774	0/0	t0014	810	1	1	0	0	0	0	copy fasta	ABHD3	chr18	21645901	21709774
ABHD3_chr18_21645901_21709774	0/0	t0015	810	1	0	1	0	0	0	copy fasta	ABHD3	chr18	21645901	21709774
ABHD3_chr18_21645901_21709774	0/0	t0016	810	1	0	0	1	0	0	copy fasta	ABHD3	chr18	21645901	21709774
ABHD3_chr18_21645901_21709774	0/0	t0017	840	1	1	0	0	0	0	copy fasta	ABHD3	chr18	21645901	21709774
ABHD3_chr18_21645901_21709774	0/0	t0018	800	1	1	0	0	0	0	copy fasta	ABHD3	chr18	21645901	21709774
ABHD4_chr14_22593300_22617963	1/0	t0001	2023	197	15	27	124	7	23	copy fasta	ABHD4	chr14	22593300	22617963
ABHD4_chr14_22593300_22617963	0/1	t0002	2023	124	20	31	47	7	18	copy fasta	ABHD4	chr14	22593300	22617963