Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANKS6_chr9_98727009_98801555	0/0	t0025	4575	1	0	0	0	1	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0026	4575	1	0	0	1	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0027	4575	1	0	0	1	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0028	4575	1	1	0	0	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0029	4575	1	0	0	1	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0030	4575	1	0	0	1	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0031	4575	1	0	0	0	0	1	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0032	4575	1	0	1	0	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0033	4575	1	0	0	1	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0034	4575	1	1	0	0	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0035	4575	1	0	0	1	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	t0036	4575	1	0	1	0	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKUB1_chr3_149756100_149797554	0/1	t0001	573	276	61	56	118	10	30	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	1/0	t0002	573	59	17	8	22	3	8	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	t0003	573	16	0	2	13	0	1	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	t0004	573	10	8	2	0	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	t0005	573	3	3	0	0	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	t0006	573	2	0	0	1	0	1	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	t0007	573	2	2	0	0	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	t0008	573	2	2	0	0	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	t0009	573	1	0	0	0	1	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	t0010	573	1	1	0	0	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKZF1_chr2_219224806_219241679	1/1	t0001	360	352	85	74	142	8	41	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	t0002	360	22	1	6	4	8	3	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	t0003	360	2	2	0	0	0	0	copy fasta	ANKZF1	chr2	219224806	219241679
ANLN_chr7_36384862_36458791	1/1	t0001	1357	310	60	49	153	9	37	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	t0002	1357	51	7	8	26	5	5	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	t0003	1357	17	8	3	3	1	2	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	t0004	1357	8	3	3	0	0	2	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	t0005	1357	6	0	5	0	1	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	t0006	1357	5	5	0	0	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	t0007	1357	5	5	0	0	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	t0008	1357	1	0	0	1	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	t0009	1357	1	0	0	1	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	t0010	1357	1	0	0	1	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	t0011	1357	1	0	0	1	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	t0012	1357	1	0	1	0	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	t0013	1357	1	0	1	0	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANO10_chr3_43360848_43627011	1/1	t0001	1173	160	31	49	46	10	22	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	t0002	1173	21	18	3	0	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	t0003	1171	14	12	2	0	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	t0004	1173	10	10	0	0	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	t0005	1173	3	2	1	0	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	t0006	1173	3	3	0	0	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	t0007	1173	2	1	0	1	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	t0008	1182	2	2	0	0	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	t0009	1173	2	0	0	0	0	2	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	t0010	1171	1	1	0	0	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	t0011	1173	1	1	0	0	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	t0012	1173	1	1	0	0	0	0	copy fasta	ANO10	chr3	43360848	43627011