JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
JPH2_chr20_44101590_44192188	0/0	t0087	7413	1	0	0	1	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0088	7412	1	0	0	1	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0089	7411	1	1	0	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0090	7412	1	0	0	1	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0091	7411	1	1	0	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0092	7411	1	1	0	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0093	7412	1	0	1	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0094	7412	1	1	0	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0095	7413	1	0	0	0	0	1	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0096	7415	1	0	0	0	0	1	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0097	7412	1	0	1	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0098	7413	1	0	0	1	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0099	7411	1	1	0	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0100	7411	1	0	0	0	0	1	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0101	7413	1	0	0	1	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0102	7413	1	0	0	0	1	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0103	7411	1	0	1	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0104	7413	1	0	0	0	0	1	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0105	7412	1	0	0	1	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0106	7413	1	0	1	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0107	7415	1	1	0	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0108	7411	1	0	0	0	0	1	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0109	7413	1	1	0	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0110	7413	1	1	0	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0111	7413	1	0	0	0	0	1	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0112	7412	1	1	0	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	t0113	7413	1	1	0	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH3_chr16_87597508_87703156	1/0	t0001	2136	272	43	66	117	10	35	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0002	2137	16	15	1	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0003	2136	10	8	2	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0004	2133	10	0	0	10	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0005	2137	9	9	0	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0006	2145	8	0	2	4	0	2	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0007	2136	7	1	3	0	3	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0008	2136	5	1	1	2	0	1	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0009	2136	4	0	0	4	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0010	2136	3	0	0	0	1	2	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0011	2133	2	2	0	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0012	2136	2	2	0	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0013	2136	2	0	0	0	0	2	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0014	2136	2	0	0	2	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0015	2137	2	2	0	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0016	2139	2	0	0	2	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0017	2134	1	1	0	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0018	2134	1	1	0	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0019	2134	1	1	0	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0020	2137	1	1	0	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0021	2136	1	0	0	0	0	1	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0022	2136	1	0	0	1	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0023	2136	1	0	0	1	0	0	copy fasta	JPH3	chr16	87597508	87703156