JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
JPH3_chr16_87597508_87703156	0/1	t0024	2136	1	0	0	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0025	2136	1	0	0	0	0	1	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0026	2136	1	0	0	0	0	1	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0027	2136	1	1	0	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0028	2136	1	1	0	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0029	2136	1	0	0	1	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0030	2136	1	0	0	1	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0031	2136	1	0	1	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0032	2137	1	0	0	1	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0033	2136	1	0	0	1	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0034	2137	1	1	0	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0035	2136	1	1	0	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0036	2139	1	1	0	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0037	2145	1	0	0	0	0	1	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0038	2142	1	0	0	1	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0039	2136	1	0	0	1	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	t0040	2136	1	0	0	1	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH4_chr14_23563038_23583790	1/1	t0001	2379	236	70	42	95	9	18	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	t0002	2379	68	2	26	26	4	10	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	t0003	2380	14	3	1	4	1	5	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	t0004	2379	10	3	2	1	0	4	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	t0005	2379	9	9	0	0	0	0	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	t0006	2379	7	7	0	0	0	0	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	t0007	2380	3	0	1	1	0	1	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	t0008	2378	3	0	0	2	0	1	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	t0009	2379	2	2	0	0	0	0	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	t0010	2379	1	1	0	0	0	0	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	t0011	2379	1	0	0	1	0	0	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	t0012	2379	1	0	0	1	0	0	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	t0013	2379	1	0	0	1	0	0	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	t0014	2379	1	0	0	1	0	0	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	t0015	2379	1	0	0	0	0	1	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	t0016	2376	1	1	0	0	0	0	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	t0017	2379	1	1	0	0	0	0	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	t0018	2379	1	0	0	1	0	0	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	t0019	2379	1	0	0	1	0	0	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	t0020	2379	1	1	0	0	0	0	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	t0021	2380	1	0	0	1	0	0	copy fasta	JPH4	chr14	23563038	23583790
JPT1_chr17_75130248_75159512	1/1	t0001	970	335	73	59	153	18	30	copy fasta	JPT1	chr17	75130248	75159512
JPT1_chr17_75130248_75159512	0/0	t0002	971	43	19	10	4	0	10	copy fasta	JPT1	chr17	75130248	75159512
JPT1_chr17_75130248_75159512	0/0	t0003	970	3	0	3	0	0	0	copy fasta	JPT1	chr17	75130248	75159512
JPT1_chr17_75130248_75159512	0/0	t0004	970	1	0	0	1	0	0	copy fasta	JPT1	chr17	75130248	75159512
JPT1_chr17_75130248_75159512	0/0	t0005	971	1	0	0	1	0	0	copy fasta	JPT1	chr17	75130248	75159512
JPT1_chr17_75130248_75159512	0/0	t0006	971	1	0	1	0	0	0	copy fasta	JPT1	chr17	75130248	75159512
JPT1_chr17_75130248_75159512	0/0	t0007	970	1	0	0	1	0	0	copy fasta	JPT1	chr17	75130248	75159512
JPT1_chr17_75130248_75159512	0/0	t0008	970	1	1	0	0	0	0	copy fasta	JPT1	chr17	75130248	75159512
JPT1_chr17_75130248_75159512	0/0	t0009	970	1	1	0	0	0	0	copy fasta	JPT1	chr17	75130248	75159512
JPT1_chr17_75130248_75159512	0/0	t0010	970	1	0	1	0	0	0	copy fasta	JPT1	chr17	75130248	75159512
JPT2_chr16_1673279_1707086	1/1	t0001	3123	296	52	51	153	10	28	copy fasta	JPT2	chr16	1673279	1707086
JPT2_chr16_1673279_1707086	0/0	t0002	3123	52	23	6	15	2	6	copy fasta	JPT2	chr16	1673279	1707086