JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
JPT2_chr16_1673279_1707086	0/0	t0003	3123	8	0	0	8	0	0	copy fasta	JPT2	chr16	1673279	1707086
JPT2_chr16_1673279_1707086	0/0	t0004	3118	3	0	0	0	0	3	copy fasta	JPT2	chr16	1673279	1707086
JPT2_chr16_1673279_1707086	0/0	t0005	3123	3	0	0	3	0	0	copy fasta	JPT2	chr16	1673279	1707086
JPT2_chr16_1673279_1707086	0/0	t0006	3123	2	2	0	0	0	0	copy fasta	JPT2	chr16	1673279	1707086
JPT2_chr16_1673279_1707086	0/0	t0007	3123	2	0	0	2	0	0	copy fasta	JPT2	chr16	1673279	1707086
JPT2_chr16_1673279_1707086	0/0	t0008	3123	2	0	0	2	0	0	copy fasta	JPT2	chr16	1673279	1707086
JPT2_chr16_1673279_1707086	0/0	t0009	3123	2	0	0	2	0	0	copy fasta	JPT2	chr16	1673279	1707086
JPT2_chr16_1673279_1707086	0/0	t0010	3123	2	0	2	0	0	0	copy fasta	JPT2	chr16	1673279	1707086
JPT2_chr16_1673279_1707086	0/0	t0011	3123	1	1	0	0	0	0	copy fasta	JPT2	chr16	1673279	1707086
JPT2_chr16_1673279_1707086	0/0	t0012	3123	1	1	0	0	0	0	copy fasta	JPT2	chr16	1673279	1707086
JPT2_chr16_1673279_1707086	0/0	t0013	3123	1	1	0	0	0	0	copy fasta	JPT2	chr16	1673279	1707086
JPT2_chr16_1673279_1707086	0/0	t0014	3123	1	0	1	0	0	0	copy fasta	JPT2	chr16	1673279	1707086
JPT2_chr16_1673279_1707086	0/0	t0015	3118	1	1	0	0	0	0	copy fasta	JPT2	chr16	1673279	1707086
JPT2_chr16_1673279_1707086	0/0	t0016	3123	1	0	1	0	0	0	copy fasta	JPT2	chr16	1673279	1707086
JPT2_chr16_1673279_1707086	0/0	t0017	3123	1	0	1	0	0	0	copy fasta	JPT2	chr16	1673279	1707086
JPT2_chr16_1673279_1707086	0/0	t0018	3123	1	1	0	0	0	0	copy fasta	JPT2	chr16	1673279	1707086
JPT2_chr16_1673279_1707086	0/0	t0019	3123	1	1	0	0	0	0	copy fasta	JPT2	chr16	1673279	1707086
JPT2_chr16_1673279_1707086	0/0	t0020	3123	1	1	0	0	0	0	copy fasta	JPT2	chr16	1673279	1707086
JPT2_chr16_1673279_1707086	0/0	t0021	3123	1	0	0	0	0	1	copy fasta	JPT2	chr16	1673279	1707086
JPT2_chr16_1673279_1707086	0/0	t0022	3123	1	1	0	0	0	0	copy fasta	JPT2	chr16	1673279	1707086
JPT2_chr16_1673279_1707086	0/0	t0023	3123	1	1	0	0	0	0	copy fasta	JPT2	chr16	1673279	1707086
JPT2_chr16_1673279_1707086	0/0	t0024	3123	1	0	0	1	0	0	copy fasta	JPT2	chr16	1673279	1707086
JRKL_chr11_96385013_96398561	1/1	t0001	1566	202	42	46	85	8	19	copy fasta	JRKL	chr11	96385013	96398561
JRKL_chr11_96385013_96398561	0/0	t0002	1564	97	17	12	49	3	16	copy fasta	JRKL	chr11	96385013	96398561
JRKL_chr11_96385013_96398561	0/0	t0003	1555	73	6	6	55	2	4	copy fasta	JRKL	chr11	96385013	96398561
JRKL_chr11_96385013_96398561	0/0	t0004	1565	12	10	1	1	0	0	copy fasta	JRKL	chr11	96385013	96398561
JRKL_chr11_96385013_96398561	0/0	t0005	1557	8	8	0	0	0	0	copy fasta	JRKL	chr11	96385013	96398561
JRKL_chr11_96385013_96398561	0/0	t0006	1565	7	2	2	2	1	0	copy fasta	JRKL	chr11	96385013	96398561
JRKL_chr11_96385013_96398561	0/0	t0007	1566	6	3	3	0	0	0	copy fasta	JRKL	chr11	96385013	96398561
JRKL_chr11_96385013_96398561	0/0	t0008	1554	5	0	0	5	0	0	copy fasta	JRKL	chr11	96385013	96398561
JRKL_chr11_96385013_96398561	0/0	t0009	1567	4	2	0	2	0	0	copy fasta	JRKL	chr11	96385013	96398561
JRKL_chr11_96385013_96398561	0/0	t0010	1565	3	0	2	0	0	1	copy fasta	JRKL	chr11	96385013	96398561
JRKL_chr11_96385013_96398561	0/0	t0011	1566	3	0	1	0	2	0	copy fasta	JRKL	chr11	96385013	96398561
JRKL_chr11_96385013_96398561	0/0	t0012	1556	2	0	0	2	0	0	copy fasta	JRKL	chr11	96385013	96398561
JRKL_chr11_96385013_96398561	0/0	t0013	1564	2	0	1	0	0	1	copy fasta	JRKL	chr11	96385013	96398561
JRKL_chr11_96385013_96398561	0/0	t0014	1566	1	0	0	0	0	1	copy fasta	JRKL	chr11	96385013	96398561
JRKL_chr11_96385013_96398561	0/0	t0015	1565	1	1	0	0	0	0	copy fasta	JRKL	chr11	96385013	96398561
JRKL_chr11_96385013_96398561	0/0	t0016	1567	1	1	0	0	0	0	copy fasta	JRKL	chr11	96385013	96398561
JRKL_chr11_96385013_96398561	0/0	t0017	1566	1	0	0	1	0	0	copy fasta	JRKL	chr11	96385013	96398561
JRK_chr8_142652460_142674967	0/0	t0001	7394	136	24	40	47	11	14	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/1	t0002	7391	67	17	16	21	3	9	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	1/0	t0003	7391	52	0	6	33	0	12	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	t0004	7394	47	0	0	44	0	3	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	t0005	7390	11	8	0	2	0	1	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	t0006	7391	9	0	0	9	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	t0007	7394	8	0	3	3	1	1	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	t0008	7394	6	1	4	1	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	t0009	7391	6	0	1	5	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	t0010	7391	6	0	0	6	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	t0011	7394	5	5	0	0	0	0	copy fasta	JRK	chr8	142652460	142674967