JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
JRK_chr8_142652460_142674967	0/0	t0062	7394	1	1	0	0	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	t0063	7391	1	0	1	0	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	t0064	7391	1	1	0	0	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	t0065	7391	1	0	0	0	0	1	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	t0066	7391	1	0	0	1	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	t0067	7391	1	0	0	1	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	t0068	7391	1	0	0	0	0	1	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	t0069	7391	1	0	0	1	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	t0070	7391	1	0	0	0	0	1	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	t0071	7391	1	1	0	0	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	t0072	7391	1	1	0	0	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	t0073	7391	1	0	0	1	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	t0074	7391	1	1	0	0	0	0	copy fasta	JRK	chr8	142652460	142674967
JSRP1_chr19_2247252_2261417	0/1	t0001	143	399	90	75	177	14	42	copy fasta	JSRP1	chr19	2247252	2261417
JSRP1_chr19_2247252_2261417	1/0	t0002	143	35	0	9	17	4	4	copy fasta	JSRP1	chr19	2247252	2261417
JSRP1_chr19_2247252_2261417	0/0	t0003	143	2	2	0	0	0	0	copy fasta	JSRP1	chr19	2247252	2261417
JTB_chr1_153969269_153982674	1/1	t0001	833	367	66	71	172	12	44	copy fasta	JTB	chr1	153969269	153982674
JTB_chr1_153969269_153982674	0/0	t0002	829	8	7	1	0	0	0	copy fasta	JTB	chr1	153969269	153982674
JTB_chr1_153969269_153982674	0/0	t0003	833	2	2	0	0	0	0	copy fasta	JTB	chr1	153969269	153982674
JTB_chr1_153969269_153982674	0/0	t0004	833	2	2	0	0	0	0	copy fasta	JTB	chr1	153969269	153982674
JTB_chr1_153969269_153982674	0/0	t0005	833	1	0	0	1	0	0	copy fasta	JTB	chr1	153969269	153982674
JTB_chr1_153969269_153982674	0/0	t0006	833	1	1	0	0	0	0	copy fasta	JTB	chr1	153969269	153982674
JTB_chr1_153969269_153982674	0/0	t0007	833	1	0	0	1	0	0	copy fasta	JTB	chr1	153969269	153982674
JTB_chr1_153969269_153982674	0/0	t0008	833	1	1	0	0	0	0	copy fasta	JTB	chr1	153969269	153982674
JTB_chr1_153969269_153982674	0/0	t0009	833	1	1	0	0	0	0	copy fasta	JTB	chr1	153969269	153982674
JTB_chr1_153969269_153982674	0/0	t0010	833	1	1	0	0	0	0	copy fasta	JTB	chr1	153969269	153982674
JTB_chr1_153969269_153982674	0/0	t0011	833	1	1	0	0	0	0	copy fasta	JTB	chr1	153969269	153982674
JUNB_chr19_12786486_12798315	1/1	t0001	787	325	71	64	131	14	43	copy fasta	JUNB	chr19	12786486	12798315
JUNB_chr19_12786486_12798315	0/0	t0002	787	17	7	1	6	2	1	copy fasta	JUNB	chr19	12786486	12798315
JUNB_chr19_12786486_12798315	0/0	t0003	788	8	7	1	0	0	0	copy fasta	JUNB	chr19	12786486	12798315
JUNB_chr19_12786486_12798315	0/0	t0004	787	8	8	0	0	0	0	copy fasta	JUNB	chr19	12786486	12798315
JUNB_chr19_12786486_12798315	0/0	t0005	787	3	0	0	3	0	0	copy fasta	JUNB	chr19	12786486	12798315
JUNB_chr19_12786486_12798315	0/0	t0006	787	1	1	0	0	0	0	copy fasta	JUNB	chr19	12786486	12798315
JUND_chr19_18274694_18286622	1/1	t0001	886	109	29	26	34	6	12	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0002	904	102	3	19	69	6	5	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0003	903	95	5	16	54	3	17	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0004	904	36	29	4	0	1	2	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0005	903	11	0	2	7	0	2	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0006	903	8	1	0	5	0	2	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0007	904	6	5	1	0	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0008	904	5	5	0	0	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0009	887	5	2	1	1	0	1	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0010	904	4	0	0	4	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0011	904	3	0	0	3	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0012	904	3	0	0	2	0	1	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0013	905	2	0	0	2	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0014	904	1	1	0	0	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0015	904	1	1	0	0	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0016	903	1	0	0	0	0	1	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0017	906	1	0	1	0	0	0	copy fasta	JUND	chr19	18274694	18286622