JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
JUND_chr19_18274694_18286622	0/0	t0018	905	1	0	1	0	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0019	904	1	0	0	1	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0020	903	1	0	0	1	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0021	903	1	0	1	0	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0022	887	1	0	0	1	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0023	904	1	0	0	1	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0024	904	1	1	0	0	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0025	904	1	0	1	0	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0026	888	1	0	0	1	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0027	886	1	1	0	0	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0028	906	1	0	0	1	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0029	904	1	0	1	0	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0030	903	1	0	0	1	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0031	886	1	0	0	0	0	1	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	t0032	862	1	1	0	0	0	0	copy fasta	JUND	chr19	18274694	18286622
JUN_chr1_58775791_58789047	0/1	t0001	2262	325	51	58	158	16	41	copy fasta	JUN	chr1	58775791	58789047
JUN_chr1_58775791_58789047	0/0	t0002	2258	30	0	10	20	0	0	copy fasta	JUN	chr1	58775791	58789047
JUN_chr1_58775791_58789047	0/0	t0003	2264	28	17	6	2	1	2	copy fasta	JUN	chr1	58775791	58789047
JUN_chr1_58775791_58789047	0/0	t0004	2262	10	10	0	0	0	0	copy fasta	JUN	chr1	58775791	58789047
JUN_chr1_58775791_58789047	0/0	t0005	2262	8	0	0	8	0	0	copy fasta	JUN	chr1	58775791	58789047
JUN_chr1_58775791_58789047	0/0	t0006	2262	5	0	3	0	1	1	copy fasta	JUN	chr1	58775791	58789047
JUN_chr1_58775791_58789047	0/0	t0007	2264	4	3	1	0	0	0	copy fasta	JUN	chr1	58775791	58789047
JUN_chr1_58775791_58789047	0/0	t0008	2262	4	3	1	0	0	0	copy fasta	JUN	chr1	58775791	58789047
JUN_chr1_58775791_58789047	0/0	t0009	2262	3	0	0	3	0	0	copy fasta	JUN	chr1	58775791	58789047
JUN_chr1_58775791_58789047	0/0	t0010	2262	3	0	0	3	0	0	copy fasta	JUN	chr1	58775791	58789047
JUN_chr1_58775791_58789047	0/0	t0011	2262	3	3	0	0	0	0	copy fasta	JUN	chr1	58775791	58789047
JUN_chr1_58775791_58789047	1/0	t0012	2262	2	1	0	0	0	0	copy fasta	JUN	chr1	58775791	58789047
JUN_chr1_58775791_58789047	0/0	t0013	2262	2	2	0	0	0	0	copy fasta	JUN	chr1	58775791	58789047
JUN_chr1_58775791_58789047	0/0	t0014	2262	2	0	1	0	0	1	copy fasta	JUN	chr1	58775791	58789047
JUN_chr1_58775791_58789047	0/0	t0015	2264	1	1	0	0	0	0	copy fasta	JUN	chr1	58775791	58789047
JUN_chr1_58775791_58789047	0/0	t0016	2170	1	0	1	0	0	0	copy fasta	JUN	chr1	58775791	58789047
JUN_chr1_58775791_58789047	0/0	t0017	2262	1	1	0	0	0	0	copy fasta	JUN	chr1	58775791	58789047
JUN_chr1_58775791_58789047	0/0	t0018	2262	1	0	0	1	0	0	copy fasta	JUN	chr1	58775791	58789047
JUN_chr1_58775791_58789047	0/0	t0019	2262	1	0	0	0	0	1	copy fasta	JUN	chr1	58775791	58789047
JUN_chr1_58775791_58789047	0/0	t0020	2262	1	0	0	0	0	1	copy fasta	JUN	chr1	58775791	58789047
JUN_chr1_58775791_58789047	0/0	t0021	2262	1	1	0	0	0	0	copy fasta	JUN	chr1	58775791	58789047
JUN_chr1_58775791_58789047	0/0	t0022	2262	1	0	1	0	0	0	copy fasta	JUN	chr1	58775791	58789047
JUN_chr1_58775791_58789047	0/0	t0023	2262	1	0	0	0	0	1	copy fasta	JUN	chr1	58775791	58789047
JUN_chr1_58775791_58789047	0/0	t0024	2262	1	1	0	0	0	0	copy fasta	JUN	chr1	58775791	58789047
JUN_chr1_58775791_58789047	0/0	t0025	2262	1	0	0	1	0	0	copy fasta	JUN	chr1	58775791	58789047
JUP_chr17_41749609_41791711	0/0	t0001	1268	131	35	23	44	7	22	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	t0002	1268	84	11	13	54	0	6	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	t0003	1268	79	16	16	31	4	12	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	t0004	1268	73	4	14	47	5	3	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	t0005	1268	9	9	0	0	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	t0006	1268	6	6	0	0	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	t0007	1268	4	4	0	0	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	t0008	1268	3	0	3	0	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	t0009	1268	3	0	0	3	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	t0010	1268	2	2	0	0	0	0	copy fasta	JUP	chr17	41749609	41791711