JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
JUP_chr17_41749609_41791711	0/0	t0011	1268	1	1	0	0	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	t0012	1279	1	0	0	1	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	t0013	1268	1	1	0	0	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	t0014	1268	1	0	0	1	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	t0015	1268	1	0	1	0	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	t0016	1268	1	0	0	1	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	t0017	1268	1	1	0	0	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	t0018	1268	1	0	0	1	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	t0019	1268	1	1	0	0	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	t0020	1268	1	0	1	0	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	t0021	1268	1	0	0	1	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	t0022	1268	1	0	1	0	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	t0023	1268	1	1	0	0	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	t0024	1268	1	0	0	1	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	t0025	1268	1	0	0	1	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	t0026	1224	1	0	0	0	0	1	copy fasta	JUP	chr17	41749609	41791711
KALRN_chr3_124028369_124731325	1/0	t0001	7228	36	8	8	17	2	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0002	7229	18	3	6	6	2	1	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0003	7228	12	8	2	2	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0004	7228	6	6	0	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/1	t0005	7229	5	1	0	1	1	1	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0006	7228	4	3	1	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0007	7228	4	4	0	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0008	7229	3	1	2	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0009	7228	2	2	0	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0010	7228	2	2	0	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0011	7228	1	0	0	1	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0012	7228	1	1	0	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0013	7228	1	1	0	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0014	7228	1	1	0	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0015	7229	1	1	0	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0016	7228	1	1	0	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0017	7229	1	1	0	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0018	7228	1	1	0	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0019	7228	1	1	0	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0020	7228	1	1	0	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0021	7228	1	0	0	0	1	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0022	7228	1	1	0	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0023	7228	1	1	0	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0024	7228	1	0	1	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0025	7228	1	0	0	0	1	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0026	7228	1	0	0	1	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0027	7228	1	0	0	0	1	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0028	7228	1	1	0	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0029	7228	1	0	1	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0030	7229	1	0	0	1	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0031	7228	1	0	0	1	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0032	7228	1	1	0	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0033	7228	1	0	1	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	t0034	7228	1	1	0	0	0	0	copy fasta	KALRN	chr3	124028369	124731325