JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KANK1_chr9_499695_751103	0/0	t0001	1012	72	33	6	30	3	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/1	t0002	1012	65	14	14	21	7	8	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	1/0	t0003	1012	42	0	11	12	5	13	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	t0004	1012	33	1	7	23	0	2	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	t0005	1012	14	3	5	0	1	5	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	t0006	1012	11	7	4	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	t0007	1012	6	5	1	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	t0008	1012	4	3	1	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	t0009	1012	1	0	1	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	t0010	1012	1	0	0	1	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	t0011	1012	1	0	0	1	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	t0012	1012	1	1	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	t0013	1012	1	1	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	t0014	1012	1	1	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	t0015	1012	1	1	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK2_chr19_11159270_11202545	0/0	t0001	2628	51	4	3	42	0	2	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0002	2580	49	0	15	16	6	12	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0003	2608	39	7	4	24	0	4	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/1	t0004	2600	31	1	16	7	1	5	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0005	2614	26	7	9	2	3	5	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0006	2594	18	9	7	0	1	1	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0007	2600	13	1	0	12	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0008	2624	12	0	4	8	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0009	2614	12	5	0	7	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0010	2594	10	7	0	2	0	1	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0011	2620	7	6	1	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0012	2604	7	2	4	0	0	1	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0013	2580	6	1	0	5	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0014	2580	6	0	3	1	1	1	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0015	2632	4	1	1	2	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0016	2610	4	0	2	0	2	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0017	2612	4	0	0	4	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0018	2600	4	4	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0019	2594	4	1	0	1	1	1	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0020	2624	3	0	0	3	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	1/0	t0021	2628	3	0	0	1	1	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0022	2604	3	0	1	2	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0023	2590	3	2	1	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0024	2593	3	0	0	2	0	1	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0025	2600	3	3	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0026	2590	3	3	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0027	2600	2	0	0	2	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0028	2628	2	0	0	2	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0029	2614	2	2	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0030	2628	2	2	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0031	2620	2	1	1	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0032	2624	2	0	0	2	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0033	2580	2	1	0	0	0	1	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0034	2608	2	0	0	1	0	1	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0035	2594	2	2	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545