JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KANK2_chr19_11159270_11202545	0/0	t0036	2590	2	0	0	2	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0037	2608	2	2	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0038	2596	2	2	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0039	2608	2	2	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0040	2608	2	1	0	1	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0041	2580	2	0	0	2	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0042	2586	1	1	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0043	2586	1	1	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0044	2582	1	1	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0045	2600	1	0	0	1	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0046	2614	1	0	0	0	0	1	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0047	2628	1	1	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0048	2628	1	0	0	1	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0049	2628	1	0	0	1	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0050	2628	1	0	0	1	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0051	2600	1	0	0	1	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0052	2632	1	1	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0053	2610	1	0	0	1	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0054	2600	1	0	0	0	0	1	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0055	2610	1	0	0	1	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0056	2628	1	1	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0057	2614	1	0	1	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0058	2610	1	1	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0059	2620	1	0	0	0	0	1	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0060	2580	1	0	0	1	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0061	2608	1	1	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0062	2608	1	0	0	1	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0063	2612	1	1	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0064	2580	1	0	0	0	0	1	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0065	2590	1	1	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0066	2594	1	1	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0067	2596	1	1	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0068	2608	1	1	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0069	2600	1	1	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0070	2594	1	0	0	1	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0071	2580	1	1	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0072	2604	1	0	0	1	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0073	2604	1	1	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0074	2604	1	0	1	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0075	2594	1	1	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0076	2608	1	1	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	t0077	2600	1	1	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK3_chr19_8317584_8348262	1/0	t0001	322	297	57	60	137	14	28	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	t0002	320	56	25	10	13	3	5	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/1	t0003	314	40	3	6	20	1	9	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	t0004	320	7	7	0	0	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	t0005	322	4	4	0	0	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	t0006	322	2	0	2	0	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK4_chr1_62231165_62324434	0/0	t0001	2510	116	17	20	60	3	16	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/1	t0002	2513	57	6	14	23	4	9	copy fasta	KANK4	chr1	62231165	62324434