Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANO10_chr3_43360848_43627011	0/0	t0013	1173	1	0	1	0	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	t0014	1173	1	0	0	1	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	t0015	1173	1	1	0	0	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	t0016	1173	1	1	0	0	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO1_chr11_70073317_70194530	0/1	t0001	1818	194	58	53	51	12	19	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	t0002	1818	54	10	10	25	2	7	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	t0003	1818	12	2	5	3	1	1	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	t0004	1819	6	3	2	0	0	1	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	t0005	1818	5	0	1	2	1	1	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	t0006	1817	5	1	1	2	0	1	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	t0007	1818	5	5	0	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	1/0	t0008	1817	4	3	0	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	t0009	1817	3	0	0	2	0	1	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	t0010	1818	2	1	1	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	t0011	1818	2	0	0	0	0	2	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	t0012	1819	2	2	0	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	t0013	1818	1	0	0	1	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	t0014	1818	1	0	0	1	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	t0015	1818	1	0	1	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	t0016	1818	1	1	0	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	t0017	1818	1	0	0	0	0	1	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	t0018	1818	1	0	0	1	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	t0019	1819	1	1	0	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	t0020	1817	1	1	0	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO2_chr12_5557655_5950259	0/1	t0001	687	112	38	33	26	4	10	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	1/0	t0002	687	32	18	6	4	0	3	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	t0003	687	6	5	1	0	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	t0004	687	3	0	2	0	0	1	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	t0005	687	3	3	0	0	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	t0006	687	2	0	2	0	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	t0007	687	2	2	0	0	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	t0008	687	1	1	0	0	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	t0009	687	1	1	0	0	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO3_chr11_26327130_26668289	1/0	t0001	2992	37	19	8	8	0	1	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	t0002	2992	33	0	6	18	1	8	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	t0003	2993	25	10	10	4	1	0	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	t0004	2993	16	0	0	16	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	t0005	2992	15	2	7	4	0	2	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	t0006	2992	10	4	2	1	0	3	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	t0007	2992	9	9	0	0	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/1	t0008	2991	6	2	2	0	0	1	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	t0009	2993	5	4	1	0	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	t0010	2993	5	1	0	0	0	4	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	t0011	2992	5	5	0	0	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	t0012	2989	4	0	2	0	0	2	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	t0013	2992	2	2	0	0	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	t0014	2992	2	2	0	0	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	t0015	2993	1	1	0	0	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	t0016	2992	1	1	0	0	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	t0017	2974	1	0	0	1	0	0	copy fasta	ANO3	chr11	26327130	26668289