JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KANK4_chr1_62231165_62324434	0/0	t0003	2511	26	11	0	11	0	4	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	t0004	2515	17	3	11	0	3	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	t0005	2514	13	6	6	0	0	1	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	t0006	2514	11	10	0	0	0	1	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	t0007	2513	11	3	2	1	1	4	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	t0008	2510	10	0	3	7	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	t0009	2513	8	6	1	0	0	1	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	t0010	2513	7	0	0	3	1	3	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	t0011	2514	6	6	0	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	t0012	2513	5	4	0	0	0	1	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	t0013	2508	5	0	1	0	2	2	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	t0014	2512	4	2	1	1	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	t0015	2514	3	1	1	1	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	1/0	t0016	2512	3	0	1	0	0	1	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	t0017	2512	2	1	1	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	t0018	2512	2	2	0	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	t0019	2513	2	1	1	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	t0020	2513	1	0	0	1	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	t0021	2513	1	0	1	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	t0022	2511	1	0	0	1	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	t0023	2512	1	1	0	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	t0024	2513	1	0	1	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	t0025	2515	1	1	0	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	t0026	2512	1	0	0	0	0	1	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	t0027	2516	1	1	0	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	t0028	2513	1	0	1	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	t0029	2510	1	1	0	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	t0030	2508	1	1	0	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	t0031	2510	1	0	0	1	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	t0032	2510	1	1	0	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	t0033	2514	1	1	0	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANSL1L_chr2_210016421_210176409	0/1	t0001	1804	181	24	34	93	7	22	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	t0002	1806	20	11	5	0	2	2	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	t0003	1801	10	0	0	10	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	t0004	1807	9	0	2	7	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	t0005	1810	8	8	0	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	t0006	1808	6	4	0	0	0	2	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	t0007	1810	5	2	2	1	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	t0008	1795	4	0	1	0	2	1	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	t0009	1801	4	4	0	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	t0010	1806	4	3	1	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	t0011	1806	3	3	0	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	t0012	1804	3	0	0	3	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	t0013	1809	3	3	0	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	t0014	1810	3	0	0	3	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	t0015	1805	2	1	1	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	t0016	1813	2	1	1	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	t0017	1821	2	2	0	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	1/0	t0018	1819	2	1	0	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	t0019	1804	1	0	0	1	0	0	copy fasta	KANSL1L	chr2	210016421	210176409