JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KANSL1L_chr2_210016421_210176409	0/0	t0020	1786	1	1	0	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	t0021	1807	1	1	0	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	t0022	1804	1	1	0	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	t0023	1806	1	0	1	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	t0024	1804	1	0	0	0	0	1	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	t0025	1806	1	1	0	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	t0026	1808	1	1	0	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	t0027	1804	1	1	0	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	t0028	1804	1	0	0	0	1	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	t0029	1811	1	1	0	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	t0030	1815	1	1	0	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	t0031	1807	1	1	0	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1_chr17_46024916_46198429	0/0	t0001	2257	104	32	19	42	4	7	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	t0002	2258	75	3	13	50	3	6	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/1	t0003	2257	55	11	13	15	3	12	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	t0004	2256	29	25	0	4	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	t0005	2275	20	2	7	1	4	6	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	t0006	2258	8	8	0	0	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	t0007	2253	4	0	0	4	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	t0008	2257	3	3	0	0	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	t0009	2259	3	0	0	3	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	t0010	2258	2	0	0	0	2	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	t0011	2256	2	1	1	0	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	t0012	2256	2	2	0	0	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	t0013	2258	2	2	0	0	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	t0014	2257	1	1	0	0	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	t0015	2256	1	0	0	1	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	t0016	2257	1	0	0	1	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	t0017	2258	1	0	0	1	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	t0018	2256	1	0	0	1	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	t0019	2256	1	1	0	0	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	t0020	2257	1	0	0	1	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	t0021	2258	1	0	0	1	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	t0022	2258	1	0	0	1	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	t0023	2257	1	0	0	0	0	1	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	t0024	2283	1	0	1	0	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	t0025	2276	1	1	0	0	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL2_chr12_48648211_48687238	1/1	t0001	895	286	77	57	112	9	29	copy fasta	KANSL2	chr12	48648211	48687238
KANSL2_chr12_48648211_48687238	0/0	t0002	893	25	7	6	0	5	7	copy fasta	KANSL2	chr12	48648211	48687238
KANSL2_chr12_48648211_48687238	0/0	t0003	895	4	3	1	0	0	0	copy fasta	KANSL2	chr12	48648211	48687238
KANSL2_chr12_48648211_48687238	0/0	t0004	895	4	4	0	0	0	0	copy fasta	KANSL2	chr12	48648211	48687238
KANSL2_chr12_48648211_48687238	0/0	t0005	893	2	0	2	0	0	0	copy fasta	KANSL2	chr12	48648211	48687238
KANSL2_chr12_48648211_48687238	0/0	t0006	895	1	1	0	0	0	0	copy fasta	KANSL2	chr12	48648211	48687238
KANSL3_chr2_96588172_96643312	1/1	t0001	2520	285	61	40	146	10	26	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	t0002	2510	10	9	1	0	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	t0003	2520	7	4	2	1	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	t0004	2520	6	6	0	0	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	t0005	2520	5	0	5	0	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	t0006	2520	3	0	2	0	0	1	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	t0007	2520	3	0	0	3	0	0	copy fasta	KANSL3	chr2	96588172	96643312