JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KANSL3_chr2_96588172_96643312	0/0	t0008	2520	3	0	0	0	0	3	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	t0009	2520	2	2	0	0	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	t0010	2520	1	0	0	1	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	t0011	2520	1	0	0	1	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	t0012	2520	1	0	0	1	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	t0013	2520	1	1	0	0	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	t0014	2520	1	1	0	0	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	t0015	2520	1	1	0	0	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	t0016	2520	1	1	0	0	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	t0017	2520	1	0	0	1	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	t0018	2520	1	0	1	0	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	t0019	2520	1	0	1	0	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	t0020	2520	1	0	1	0	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	t0021	2520	1	0	0	1	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	t0022	2510	1	1	0	0	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	t0023	2520	1	0	0	1	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	t0024	2520	1	1	0	0	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	t0025	2520	1	0	1	0	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANTR_chrX_53089142_53132438	0/0	t0001	4024	171	36	31	84	7	13	copy fasta	KANTR	chrX	53089142	53132438
KANTR_chrX_53089142_53132438	1/0	t0002	4020	33	12	0	16	0	4	copy fasta	KANTR	chrX	53089142	53132438
KANTR_chrX_53089142_53132438	0/0	t0003	4024	9	9	0	0	0	0	copy fasta	KANTR	chrX	53089142	53132438
KANTR_chrX_53089142_53132438	0/0	t0004	4025	5	5	0	0	0	0	copy fasta	KANTR	chrX	53089142	53132438
KANTR_chrX_53089142_53132438	0/0	t0005	4024	3	2	1	0	0	0	copy fasta	KANTR	chrX	53089142	53132438
KANTR_chrX_53089142_53132438	0/0	t0006	4020	3	0	0	0	0	3	copy fasta	KANTR	chrX	53089142	53132438
KANTR_chrX_53089142_53132438	0/0	t0007	4020	3	0	0	0	3	0	copy fasta	KANTR	chrX	53089142	53132438
KANTR_chrX_53089142_53132438	0/0	t0008	4025	2	2	0	0	0	0	copy fasta	KANTR	chrX	53089142	53132438
KANTR_chrX_53089142_53132438	0/0	t0009	4025	2	2	0	0	0	0	copy fasta	KANTR	chrX	53089142	53132438
KANTR_chrX_53089142_53132438	0/0	t0010	4024	2	0	1	0	1	0	copy fasta	KANTR	chrX	53089142	53132438
KANTR_chrX_53089142_53132438	0/0	t0011	4028	1	1	0	0	0	0	copy fasta	KANTR	chrX	53089142	53132438
KANTR_chrX_53089142_53132438	0/0	t0012	4025	1	1	0	0	0	0	copy fasta	KANTR	chrX	53089142	53132438
KANTR_chrX_53089142_53132438	0/0	t0013	4024	1	0	1	0	0	0	copy fasta	KANTR	chrX	53089142	53132438
KANTR_chrX_53089142_53132438	0/0	t0014	4024	1	0	0	1	0	0	copy fasta	KANTR	chrX	53089142	53132438
KANTR_chrX_53089142_53132438	0/0	t0015	4023	1	0	0	1	0	0	copy fasta	KANTR	chrX	53089142	53132438
KANTR_chrX_53089142_53132438	0/0	t0016	4023	1	0	0	1	0	0	copy fasta	KANTR	chrX	53089142	53132438
KANTR_chrX_53089142_53132438	0/0	t0017	4024	1	1	0	0	0	0	copy fasta	KANTR	chrX	53089142	53132438
KANTR_chrX_53089142_53132438	0/0	t0018	4024	1	1	0	0	0	0	copy fasta	KANTR	chrX	53089142	53132438
KANTR_chrX_53089142_53132438	0/0	t0019	4025	1	1	0	0	0	0	copy fasta	KANTR	chrX	53089142	53132438
KANTR_chrX_53089142_53132438	0/0	t0020	4025	1	0	0	1	0	0	copy fasta	KANTR	chrX	53089142	53132438
KANTR_chrX_53089142_53132438	0/0	t0021	4024	1	0	0	0	0	1	copy fasta	KANTR	chrX	53089142	53132438
KANTR_chrX_53089142_53132438	0/0	t0022	4024	1	0	0	0	0	1	copy fasta	KANTR	chrX	53089142	53132438
KANTR_chrX_53089142_53132438	0/0	t0023	4024	1	0	0	1	0	0	copy fasta	KANTR	chrX	53089142	53132438
KANTR_chrX_53089142_53132438	0/0	t0024	4024	1	1	0	0	0	0	copy fasta	KANTR	chrX	53089142	53132438
KANTR_chrX_53089142_53132438	0/1	t0025	4024	1	0	0	0	0	0	copy fasta	KANTR	chrX	53089142	53132438
KANTR_chrX_53089142_53132438	0/0	t0026	4020	1	0	1	0	0	0	copy fasta	KANTR	chrX	53089142	53132438
KARS1_chr16_75622724_75652665	1/1	t0001	198	375	81	76	166	12	38	copy fasta	KARS1	chr16	75622724	75652665
KARS1_chr16_75622724_75652665	0/0	t0002	198	3	3	0	0	0	0	copy fasta	KARS1	chr16	75622724	75652665
KARS1_chr16_75622724_75652665	0/0	t0003	198	2	0	2	0	0	0	copy fasta	KARS1	chr16	75622724	75652665
KASH5_chr19_49383249_49422990	1/0	t0001	655	148	28	39	62	2	16	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/1	t0002	655	111	19	18	47	5	21	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	t0003	655	46	6	9	23	3	5	copy fasta	KASH5	chr19	49383249	49422990